1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTTTTGTTTGGAGGAGATTTCATCACAAAACCAAGTGAAGGCATCTGTTCAACGTAGGATCCGCCAGAGTATCCAAGATGAGgtatgtctgttgtttcatttgtctttttccccttcttaaacttttatgatttcgtgaagtttgtcagatataaatatgtttatgttaatgttgcag
species | Arabidopsis thaliana |
transcript | AT1G09150.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGTGAAGGCATCTGTTCAACGTAGGATCCGCCAGAGTATCCAAGATGAG TACCCGGGACTTGAATCAGTGATGGAGGATCTACTTCCCAAAAAGATTCCTEST: gi|86061003|gb|DR356760.1|DR356760
genomic: AAGTGAAGGCATCTGTTCAACGTAGGATCCGCCAGAGTATCCAAGATGAGgtatgtctgt ... aatgttgcagTACCCGGGACTTGAATCAGTGATGGAGGATCTACTTCCCAAAAAGATTCCT
EST: AAGTGAAGGCATCTGTTCAACGTAGGATCCGCCAGAGTATCCAAGATGAG TACCCGGGACTTGAATCAGTGATGGAGGATCTACTTCCCAAAAAGATTCCTEST: gi|164036472|gb|EL969114.1|EL969114
genomic: AAGTGAAGGCATCTGTTCAACGTAGGATCCGCCAGAGTATCCAAGATGAGgtatgtctgt ... aatgttgcagTACCCGGGACTTGAATCAGTGATGGAGGATCTACTTCCCAAAAAGATTCCT
EST: CAACGTAGGATCCGCCAGAGTATCCAAGATGAG TACCCGGGACTTGAATCAGTGATGGAGGATCTACTTCCCAAAAAGATTCCTEST: gi|86061005|gb|DR356762.1|DR356762
genomic: CAACGTAGGATCCGCCAGAGTATCCAAGATGAGgtatgtctgt ... aatgttgcagTACCCGGGACTTGAATCAGTGATGGAGGATCTACTTCCCAAAAAGATTCCT
EST: AAGTGAAGGCTTCTGTTCAACGTAGGATCCGCCAGAGTATCCAAGATGAG TACCCGGGACTTGAATCAGTGATGGAGGATCTACTTCCCAAAAAGATTCCTEST: gi|86061004|gb|DR356761.1|DR356761
genomic: AAGTGAAGGCATCTGTTCAACGTAGGATCCGCCAGAGTATCCAAGATGAGgtatgtctgt ... aatgttgcagTACCCGGGACTTGAATCAGTGATGGAGGATCTACTTCCCAAAAAGATTCCT
EST: AAGTGAAGGCATCTGTTCAACGTAGGATCCGCCAGAGTATCCAAGATGAG TACCCGGGACTTGAATCAGTGATGGAGGATCTACTTCCCAAAAAGATTCCT
genomic: AAGTGAAGGCATCTGTTCAACGTAGGATCCGCCAGAGTATCCAAGATGAGgtatgtctgt ... aatgttgcagTACCCGGGACTTGAATCAGTGATGGAGGATCTACTTCCCAAAAAGATTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTGTTTGGAGGAGATTTCATCACAAAACCAAGTGAAGGCATCTGTTCAACGTAGGATCCGCCAGAGTATCCAAGATGAGgtatgtctgttgtttcatttgtctttttccccttcttaaacttttatgatttcgtgaagtttgtcagatataaatatgtttatgttaatgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG