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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTACACAACCTCGATTTCAGTTTATTGTGATGAATCGTCGTAATACAGgtcaggatttattcaaataaagttggtgtgtgtcatgtgtctagaaaaggtttagatttagtaatatattgcaagttcttatttaaggattcagtattagtaatcatcagtgtgttgctgtatttgtctggatag

Basic information

species Arabidopsis thaliana
transcript AT1G08370.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G08370.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os07g14580.1 (Oryza sativa), 5'ss of exon 3
AAGTACACAACCTCGATTTCAGTTTATTGTGATGAATCGTCGTAATACAGgtcaggatttattcaaataaagttggtgtgtgtcatgtgtctagaaaaggtttagatttagtaatatattgcaagttcttatttaaggattcagtattagtaatcatcagtgtgttgctgtatttgtctggatag
 | | | || ||  |||| |||||| |||| ||||||||||||||||||||| | | |  ||  ||||    ||||| |   |   ||       ||   | || | || |   ||| || |||  |     ||    |  | ||    | |||  ||| | |                      
GAATGCGCAGCCCAGATTCCAGTTTGTTGTCATGAATCGTCGTAATACAGgt-acgctgcatgaaaattttcttggttttcttagagtt-----gaagtttctataattggc--tatgttacaacct-----ttgtaaaacctgtgcgtgaaattgtcaatct----------------------

upper sequence: AT1G08370.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA13G39120.1 (Glycine max), 5'ss of exon 3
AAGTACACAACCTCGATTTCAGTTTATTGTGATGAATCGTCGTAATACAGgtcag-gatttattcaaataaagttggtgtgtgtcatgtgtctagaaaaggtttagatttagtaatatattgcaagttcttatttaaggattcagtattagtaatcatcagtgtgttgctgtatttgtctggatag
 |  |||||||||||||||||||||||||||||||| ||||| ||||| ||| || || |   ||   |   |||  | | | |  | ||| | |      | || |  | | || || ||||  ||| ||      | |    |   ||     ||                             
GAACACACAACCTCGATTTCAGTTTATTGTGATGAACCGTCGCAATACTGgttagtgactccgtctgcttgtgtttttttttttggt-tgttttgtcgtt-tataaaagtgggaaaattttgctggttattg-----gaaactgggcgtaacgtgca-----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152036002|gb|AU237449.2|AU237449
EST:     AAGTACACAACCTCGATTTCAGTTTATTGTGATGAATCGTCGTAATACAG                         ATAATCTGGTGGAGAATCTCCTGGGAGATTTTGAGTATGAAGTACAAGGTC
genomic: AAGTACACAACCTCGATTTCAGTTTATTGTGATGAATCGTCGTAATACAGgtcaggattt ... gtctggatagATAATCTGGTGGAGAATCTCCTGGGAGATTTTGAGTATGAAGTACAAGGTC