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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAAAGGACAAGCGTTTCAGTGGATCTGTCAAGTTACCACATATCCCCCGTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatcttttcatggaaattgatcattttgtgctctgtttcttgtataatggttttgtgctcatttcatttggtggctctattagtttcatttgat...

Basic information

species Arabidopsis thaliana
transcript AT1G08360.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G08360.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os01g64090.1 (Oryza sativa), 5'ss of exon 3
TCAAAAGGACAAGCGTTTCAGTGGATCTGTCAAGTTACCACATATCCCCCGTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatcttttcatggaaattgatcattttgtgctctgtttcttgtataatggttttgtgctcatttcatttggtggctctattagtttcatttgat------
||||||||| |||||||||||||||||||| ||||| || || |||||||| ||||| |||||| | |||||||| || |||||||||||||||||||||||  | ||   ||| ||     |||  |||    | |  ||| |     ||||  | || |||||    | ||          |  |||  |  |   ||      
TCAAAAGGATAAGCGTTTCAGTGGATCTGTTAAGTTGCCTCACATCCCCCGCCCTAAGATGAAGGTGTGCATGCTTGGTGATGCCCAGCATGTTGAAGAGgtattgtactcttttatcagttttg--catcaacttccttgtgt---acataacagatt-gtgctttagtaatagaaaattgttgataggcttctacaatgaaggg

upper sequence: AT1G08360.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os02g21660.1 (Oryza sativa), 5'ss of exon 3
TCAAAAGGACAAGCGTTTCAGTGGATCTGTCAAGTTACCACATATCCCCCGTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatcttttcatggaaattg-atcattttgtgctctgtttcttgtataatggttttgtgctcatttcatttgg-tggct-ctattagtttcatttgat-
||||||||| |||||||||||||| ||||| ||| | || || ||||| || |||||  ||||| | |||||||| || ||||| ||||| || ||||||||    |||  ||  |  ||  ||| ||    |||   |   | |    | |   |      |  | ||  || |||| | | | ||| ||  |  ||||    
TCAAAAGGATAAGCGTTTCAGTGGTTCTGTTAAGCTGCCCCACATCCCTCGGCCTAAGTTGAAGGTTTGCATGCTTGGTGATGCTCAGCACGTCGAAGAGgtatgttatgcttctactgattttgcattgacttggttttgatatgagatgtggagagaactt--ttatcgcaattgggtagttactactacgt--atttagca

upper sequence: AT1G08360.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G023748_T02 (Zea mays), 5'ss of exon 3
TCAAAAGGACAAGCGTTTCAGTGGATCTGTCAAGTTACCACATATCCCCCGTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatcttttcatggaaattgatcattttgtgctctgtttcttgtataatggttttgtgctca---tttcatttggtggctctattagtttcatttgat---
||||||||||||||| ||||| || ||||| ||| | || || ||||| || ||||| |||||| | |||||||| || ||||| ||||||||||| |||||    |||  || |||    ||   || |  |||| | | |||   ||| | |   || || ||||    |||| ||  | |||||  |||    || |||    
TCAAAAGGACAAGCGCTTCAGCGGTTCTGTTAAGCTGCCTCACATCCCTCGCCCTAAGATGAAGGTTTGCATGCTTGGTGATGCTCAGCATGTTGAGGAGgtatgttatgcttccatc---atc--tcgtcctgtgttttttttggcgtaaatttacttggtactcaggaattcaattatttgctcttgtagcga-atatgagctt

upper sequence: AT1G08360.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA11G35450.2 (Glycine max), 5'ss of exon 3
TCAAAAGGACAAGCGTTTCAGTGGATCTGTCAAGTTACCACATATCCCCCGTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgt----gatatatctt-ttcatggaaattgatcattttgtgctctgtttcttgtataatggttttgtgctcatttcatttggtggctctattagtttcatttgat
 || |||||||||||||||||||| || |||||||| || || ||||| || || || ||||| || |||||||| || ||||| |||||||||||||||||     || |  | | ||||| |||| |  | || |||   | |  ||      |   ||       |   ||| |     |  |   |||  | || |     
ACAGAAGGACAAGCGTTTCAGTGGCTCCGTCAAGTTGCCCCACATCCCTCGCCCCAAGATGAAAATTTGCATGCTTGGTGATGCTCAGCATGTTGAAGAGgtatctaatttgccctattcatcgaaactctttatgttgccatttaattaggtgctgtagggaacccccaagtttaagaaattaacctcattgttatctt-----

upper sequence: AT1G08360.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA18G02970.1 (Glycine max), 5'ss of exon 1
TCAAAAGGACAAGCGTTTCAGTGGATCTGTCAAGTTACCACATATCCCCCGTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatcttttcatggaaattgatcattttgtgctctgtttcttgtataatggttttgtgctcatt--tcatttggtggctctattagtttcatttgat
 || |||||||||||||||||||| ||||||||| | || || ||||| || || || ||||| || |||||||| || ||||| |||||||||||||||||  | ||| ||  |||    ||  |   | || ||   |  |   | | | ||| |  |  |||| ||  |    || ||  | |    ||     |   |
ACAGAAGGACAAGCGTTTCAGTGGCTCTGTCAAGCTGCCCCACATCCCTCGCCCCAAGATGAAAATTTGCATGCTTGGTGATGCTCAGCATGTTGAAGAGgtc-tctat-ttgccatattcatcaagactcttatggattcataactatttcatgataattagctccttgattgcatgttgatttttacggtaaagctatgt

upper sequence: AT1G08360.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA13G39270.2 (Glycine max), 5'ss of exon 2
TCAAAAGGACAAGCGTTTCAGTGGATCTGTCAAGTTACCACATATCCCCCGTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatcttttcatggaaattgatcattttgtgctct-gtttcttgtataatggttttgtgctcatttcatttggtggc-tctattagtttcatttgat
 || |||||||||||||||||||| ||||| ||||| || ||||| || || || || |||||||| || ||||| |||||||||||||| ||||| ||||| | |    |||     | |    | ||     | |  | || |  |  ||  |  |  |       || |||| | |  |  ||   |  |    ||   
CCAGAAGGACAAGCGTTTCAGTGGCTCTGTTAAGTTGCCTCATATTCCTCGCCCCAAGATGAAGATTTGTATGCTTGGAGATGCCCAGCACGTTGAGGAGgtaacaataatttatgctgtagagaaccacgagattcaatcgtgtgcttcattgttttcctagatattttacattagataacacctgggatgtatgctta--

upper sequence: AT1G08360.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA19G37980.1 (Glycine max), 5'ss of exon 2
TCAAAAGGACAAGCGTTTCAGTGGATCTGTCAAGTTACCACATATCCCCCGTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtg-atatatcttttcatggaaattgat-cat-tttgtgctctgtttcttgtataatggttttgtgctcatttcatttggtggctctattagtttcatttgat
||| || || |||||||||||||| ||||| ||| | || ||||| || || ||||| ||||| |||||||||||||| ||||| ||||| |||||||||||  |||| |||| | |    |||  ||  ||   | | || |  |  |  |   |  |||||||    | |  ||||  |   |  |  ||||| | ||  |
TCAGAAAGATAAGCGTTTCAGTGGTTCTGTTAAGCTTCCGCATATTCCTCGCCCTAAGATGAAAATCTGCATGCTCGGTGATGCTCAGCACGTTGAAGAGgttcatat-tcttctaactataatatatatatgcctttactataatattcatgcgacagttttgtttcaaatggatttttttaattca--agtttaaattttt

upper sequence: AT1G08360.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA12G31040.2 (Glycine max), 5'ss of exon 2
TCAAAAGGACAAGCGTTTCAGTGGATCTGTCAAGTTACCACATATCCCCCGTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatcttttcatggaaattgatcattttgtgctctgtttctt---gtataatggttttgtgctcatttcatttggtggctctattagtttcatttgat
 || |||||||||||||| ||||| ||||| ||||| || || || || || || || |||||||| || ||||| ||||||||||| || ||||||||||| ||| | ||  ||     |    | | || || |   | ||   |   ||  |||  | |  ||||  || ||    |||  |   |   || |||||   
CCAGAAGGACAAGCGTTTTAGTGGCTCTGTTAAGTTGCCTCACATTCCTCGCCCCAAGATGAAGATTTGTATGCTTGGAGATGCCCAACACGTTGAAGAGgtaata-agctgatctaattatcaaacccttgtgcgagattttcaattgggtgcaataatatattgct--ttacagactgtgtttgcttcctttccatttata

upper sequence: AT1G08360.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA04G32330.1 (Glycine max), 5'ss of exon 1
TCAAAAGGACAAGCGTTTCAGTGGATCTGTCAAGTTACCACATATCCCCCGTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatcttttcatggaaattgatcattttgtgctctgtttctt---gtataatggttttgtgctcatttcatttggtggctctattagtttcatttgat
||| |||||||||||||| ||||| ||||| ||||| |  || || ||  | || || |||||||| || ||||| ||||||||||| |||||||||||||| ||| | ||  ||     |    | | || ||||   | ||   |   ||  |||  | |  ||||    | | |  |||  |   |   ||||||||   
TCAGAAGGACAAGCGTTTTAGTGGCTCTGTTAAGTTGCGTCACATTCCTTGCCCCAAGATGAAGATTTGTATGCTTGGAGATGCCCAACATGTTGAAGAGgtaata-agctgatctaattatcaaacccttgtgtgagattttcaattgggtgcaataatatattgctttgctgact--gtgtttgcttctttttcatttata

upper sequence: AT1G08360.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv08s0007g03340.t01 (Vitis vinifera), 5'ss of exon 3
TCAAAAGGACAAGCGTTTCAGTGGATCTGTCAAGTTACCACATATCCCCCGTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatcttttcatggaaattgatcatt--ttgtgctctgtttcttgtataatggttttg--tgctcatttcatttggtggctctattagtttcatttgat
 ||||||||||||||||| ||||| ||||| ||| | ||||| ||||| |||||||| ||||||||||||||||| || ||||| |||||||| |||||||| |  ||   |||      |  | |  | |   || |  |       |  | | || |||||  | ||| | ||||||  |    || | | |||| | |   
CCAAAAGGACAAGCGTTTTAGTGGGTCTGTGAAGCTGCCACACATCCCTCGTCCTAAGATGAAGATCTGCATGCTTGGTGATGCTCAGCATGTGGAAGAGgtaaattactgttttgacttatctaacaaataactgagaacaaaacaataaaaattgattttgatttctcctatcattttttaatcct-tgattttcctgt---

upper sequence: AT1G08360.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv06s0080g00400.t01 (Vitis vinifera), 5'ss of exon 5
TCAAAAGGACAAGCGTTTCAGTGGATCTGTCAAGTTACCACATATCCCCCGTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatcttttcatgg--aaattgatcattttgtgctctgtttcttgtataatggttttgtgctcatttcatttggtggctctattagtttc--atttgat
 || |||||||||||||||||||| ||||| ||||| || || ||||| || || || |||||| |||||||||| || ||||| || || || |||||||| ||    ||   | |||    ||| ||     |       ||       | ||  ||  | |||| |||  |     |   || | || |||    ||| | 
CCAGAAGGACAAGCGTTTCAGTGGTTCTGTGAAGTTGCCCCACATCCCTCGCCCCAAGATGAAGGTCTGCATGCTTGGTGATGCTCAACACGTGGAAGAGgtaattgtgctccacttggctgcattaatggcaataaaagaagtga--aagacaagtgtcat-tgctaattgaagaatatttttcaactatttttttgtttaa-

upper sequence: AT1G08360.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S427_1V6.1 (Physcomitrella patens), 5'ss of exon 2
TCAAAAGGACAAGCGTTTCAGTGGATCTGTCAAGTTACCACATATCCCCCGTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatcttttcatggaaattgatcattttgtgctctgtttcttgtataatggttttgtgctcatttcatttggtggct--ctattagtttcatttgat------------------------------------------------------------------------------------------------
 || || ||||||||||||||||| || || ||| | || || || || |||||||| |||| ||| || ||||| ||||||||||| ||| ||||||||||   ||   | |||    |  |||||  | ||    | ||||  | ||   |    ||       |  |  |    |      || |  || |||| | |                                                                                                 
CCAGAAAGACAAGCGTTTCAGTGGCTCCGTGAAGCTTCCCCACATTCCTCGTCCTAAGATGAGGATTTGTATGCTTGGAGATGCCCAACATATTGAAGAGgt---atgcttattctcaaattttgat--tctttctatttgttgatggtgccagaaattgaataaaacattgtagaattttctgctctgggtctcatctcactggcctttgtatattaaaactagaaattatcaccctttacttgataatggataattgctgatgtcgtgagtttcttttggtcgtaactcgtcacag

upper sequence: AT1G08360.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S18_121V6.1 (Physcomitrella patens), 5'ss of exon 2
TCAAAAGGACAAGCGTTTCAGTGGATCTGTCAAGTTACCACATATCCCCCGTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatct--tttcatggaaattgatcattttgtg-----ctctgtt----tcttgtataatg-gttttgtgctcatttcatttggtggctctattagtttcatttgat
 || || ||||||||||||||||| || || ||| | ||||| || || || ||||| |||    | ||||||||||||||||||||||| ||||| |||||  |   |||   |  |   |       ||| ||| |      | |||     |     || | |    |||    | | | ||||  | || | |||| || | |   | 
CCAGAAAGACAAGCGTTTCAGTGGTTCCGTGAAGCTGCCACACATTCCTCGCCCTAAGATGCGCGTGTGCATGCTCGGAGATGCCCAGCACGTTGAGGAGgtatttcctctaactcaactaatgccacccatgttgagaagcattttgtcagcatgccacattacgcaggttgattacctcttatttattcgccccatta-ttgcgtaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86024375|gb|DR320128.1|DR320128
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024361|gb|DR320114.1|DR320114
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|124915061|gb|EH988935.1|EH988935
EST:     CCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: CCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024382|gb|DR320135.1|DR320135
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|164197208|gb|ES187566.1|ES187566
EST:     TCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: TCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024360|gb|DR320113.1|DR320113
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024351|gb|DR320104.1|DR320104
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024395|gb|DR320148.1|DR320148
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024386|gb|DR320139.1|DR320139
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024388|gb|DR320141.1|DR320141
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|152035074|gb|BP843633.2|BP843633
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024358|gb|DR320111.1|DR320111
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024385|gb|DR320138.1|DR320138
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024390|gb|DR320143.1|DR320143
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|116467999|gb|EG510591.1|EG510591
EST:     GCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTNNNNNNNGCT
genomic: GCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCT-AAAAAAGCT
EST: gi|86024370|gb|DR320123.1|DR320123
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024398|gb|DR320151.1|DR320151
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024371|gb|DR320124.1|DR320124
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024374|gb|DR320127.1|DR320127
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024393|gb|DR320146.1|DR320146
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024352|gb|DR320105.1|DR320105
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTCAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024354|gb|DR320107.1|DR320107
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024350|gb|DR320103.1|DR320103
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024383|gb|DR320136.1|DR320136
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|116478416|gb|EG521008.1|EG521008
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024389|gb|DR320142.1|DR320142
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024379|gb|DR320132.1|DR320132
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024387|gb|DR320140.1|DR320140
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|152034069|gb|BP866639.2|BP866639
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024399|gb|DR320152.1|DR320152
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024368|gb|DR320121.1|DR320121
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024396|gb|DR320149.1|DR320149
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024356|gb|DR320109.1|DR320109
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024381|gb|DR320134.1|DR320134
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024377|gb|DR320130.1|DR320130
EST:     GTCCTWNAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAA
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAA
EST: gi|86024366|gb|DR320119.1|DR320119
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024397|gb|DR320150.1|DR320150
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAADCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024391|gb|DR320144.1|DR320144
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024367|gb|DR320120.1|DR320120
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024380|gb|DR320133.1|DR320133
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024355|gb|DR320108.1|DR320108
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTCAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024363|gb|DR320116.1|DR320116
EST:     TCCTAAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: TCCTAAAA-TGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024392|gb|DR320145.1|DR320145
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024365|gb|DR320118.1|DR320118
EST:     GTCCTAAAATGAAGATSTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024372|gb|DR320125.1|DR320125
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024359|gb|DR320112.1|DR320112
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|164116438|gb|ES080369.1|ES080369
EST:     GGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTACTAAAAAAG
genomic: GGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCT-CTAAAAAAG
EST: gi|86024373|gb|DR320126.1|DR320126
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024384|gb|DR320137.1|DR320137
EST:     GTCCTADAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAAGCTT
EST: gi|86024394|gb|DR320147.1|DR320147
EST:     GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAG                         GCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAA
genomic: GTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatc ... cttttcgtagGCTGAGAAGATGGGGTTGGAAAACATGGATGTTGAGTCTCTAAAAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAAAAGGACAAGCGTTTCAGTGGATCTGTCAAGTTACCACATATCCCCCGTCCTAAAATGAAGATCTGCATGCTCGGAGATGCCCAGCATGTTGAAGAGgtgatatatcttttcatggaaattgatcattttgtgctctgtttcttgtataatggttttgtgctcatttcatttggtggctctattagtttcatttgat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA