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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGCTGAAGAGGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAGgtagaactttgacccttacttagttatactattcactaagctagaggtgattctagtaaaacaaaaagtatggaactttgcgagcaatctattgatattt...

Basic information

species Arabidopsis thaliana
transcript AT1G08110.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86058486|gb|DR354243.1|DR354243
EST:     GGCTGGATTTCTCTGAGATGAAATTTAGTWTGTACTTCCTGGGCTACGAG                         GATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTAGACATTT
genomic: GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAGgtagaacttt ... tatggtacagGATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTGGACATTT
EST: gi|86058484|gb|DR354241.1|DR354241
EST:     GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAG                         GATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTAGACATTT
genomic: GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAGgtagaacttt ... tatggtacagGATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTGGACATTT
EST: gi|86058487|gb|DR354244.1|DR354244
EST:     GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAG                         GATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTAGACATTT
genomic: GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAGgtagaacttt ... tatggtacagGATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTGGACATTT
EST: gi|125051290|gb|EL123559.1|EL123559
EST:     GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAG                         GATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTGG
genomic: GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAGgtagaacttt ... tatggtacagGATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTGG
EST: gi|86042017|gb|DR337772.1|DR337772
EST:     GGCTAGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAG                         GATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTGGACATTT
genomic: GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAGgtagaacttt ... tatggtacagGATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTGGACATTT
EST: gi|86058483|gb|DR354240.1|DR354240
EST:     GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAG                         GATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTAGACATTT
genomic: GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAGgtagaacttt ... tatggtacagGATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTGGACATTT
EST: gi|86042021|gb|DR337776.1|DR337776
EST:     GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAG                         GATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTGGACATTT
genomic: GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAGgtagaacttt ... tatggtacagGATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTGGACATTT
EST: gi|86058480|gb|DR354237.1|DR354237
EST:     GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAG                         GATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTAGACATTT
genomic: GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAGgtagaacttt ... tatggtacagGATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTGGACATTT
EST: gi|86058481|gb|DR354238.1|DR354238
EST:     GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAG                         GATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTGGACATTT
genomic: GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAGgtagaacttt ... tatggtacagGATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTGGACATTT
EST: gi|86079248|gb|DR375005.1|DR375005
EST:     GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAG                         GATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTGGACATTT
genomic: GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAGgtagaacttt ... tatggtacagGATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTGGACATTT
EST: gi|86058489|gb|DR354246.1|DR354246
EST:     GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAG                         GATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTAGACATTT
genomic: GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAGgtagaacttt ... tatggtacagGATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTGGACATTT
EST: gi|86058490|gb|DR354247.1|DR354247
EST:     GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAG                         GATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTAGACATTT
genomic: GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAGgtagaacttt ... tatggtacagGATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTGGACATTT
EST: gi|301501106|gb|HO206646.1|HO206646
EST:     GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAG                         GATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTGGACATTT
genomic: GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAGgtagaacttt ... tatggtacagGATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTGGACATTT
EST: gi|152035076|gb|BP843687.2|BP843687
EST:     GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAG                         GATACTACAACAGCTCCAACCGATCCAACAGAGAGAAGGGTTGGGACATTG
genomic: GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAGgtagaacttt ... tatggtacagGATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTGGACATTT
EST: gi|86058479|gb|DR354236.1|DR354236
EST:     GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAG                         GATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTGGACATTT
genomic: GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAGgtagaacttt ... tatggtacagGATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTGGACATTT
EST: gi|86058488|gb|DR354245.1|DR354245
EST:     GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAG                         GATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTAGACATTT
genomic: GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAGgtagaacttt ... tatggtacagGATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTGGACATTT
EST: gi|86058485|gb|DR354242.1|DR354242
EST:     GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAG                         GATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTAGACATTT
genomic: GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAGgtagaacttt ... tatggtacagGATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTGGACATTT
EST: gi|86058491|gb|DR354248.1|DR354248
EST:     GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAG                         GATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTAGACATTT
genomic: GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAGgtagaacttt ... tatggtacagGATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTGGACATTT
EST: gi|116447688|gb|EG490280.1|EG490280
EST:     GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAG                         GATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTGGACATTT
genomic: GGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAGgtagaacttt ... tatggtacagGATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTGGACATTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTGCTGAAGAGGCTGGATTTCTCTGAGATGAAATTTAGTTTGTACTTCCTGGGCTACGAGgtagaactttgacccttacttagttatactattcactaagctagaggtgattctagtaaaacaaaaagtatggaactttgcgagcaatctattgatattt

- - - - - - GCTGGA
- - - - - - - - - - - -  GAGATG