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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGCTACTAGTTGGAGAGCTTATAGGGAGAACCTCCAGCCTTCTACTGTACGTGGAATTCCTGATGTCAGCATTAATCCTGATCCAAAATCTGCTGAGgtactttgttcttctacttttttgtttctaccgccattctatctatctgtgatgtattagttatgtgaactaaaacaacaggaatgattttctatgcctccaatttcaaagttttgactgcaacgtccatatcaatatagaattcccatggggagaaataaatcttatggactttgatgtctcatagcag

Basic information

species Arabidopsis thaliana
transcript AT1G07110.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 3
TCTTGCTACTAGTTGGAGAGCTTATAGGGAGAACCTCCAGCCTTCTACTGTACGTGGAATTCCTGATGTCAGCATTAATCCTGATCCAAAATCTGCTGAGgtactttgttcttctacttttttgtttctaccgccattctatctatctgtgatgtattagttatgtgaactaaaacaacaggaatgattttctatgcctccaatttcaaagttttgactgcaacgtccatatcaatatagaattcccatggggagaaataaatcttatggactttgatgtctcatagcag
   |||  |||||||||||||||||  |||||| ||| ||||||| || || ||||||||||||||||| ||||||||| |||  ||| |    | ||  |   | ||   |   ||| ||   |||||   |   ||     ||    || |  | ||    |||     |       | ||||  |||| |||     | || |  | |                                                                               
---TGCGGCTAGTTGGAGAGCTTATCAGGAGAATCTCAAGCCTTCAACAGTTCGTGGAATTCCTGATGTTAGCATTAATGCTGTCCCAGAGATGGGTGCTGAGgtatggatt--aactcttgaatttcttgagaattttgggttaaagatgctaaaataaggttgtttttca------tatgaatatttttgtattaaaactatatttatg-------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116416223|gb|EG458815.1|EG458815
EST:     TACGTGGAATTCCTGATGTCAGCATTAATCCTGATCCAAAATCTGCTGAG                         TGTCCTTTAGAAAGTTTGGAGCTCGATCTTGCACATTATGAAGTTCCTGCT
genomic: TACGTGGAATTCCTGATGTCAGCATTAATCCTGATCCAAAATCTGCTGAGgtactttgtt ... ctcatagcagTGTCCTTTAGAAAGTTTGGAGCTCGATCTTGCACATTATGAAGTTCCTGCT
EST: gi|125320388|gb|EL334473.1|EL334473
EST:     AATTCCTGATGTCAGCATTAATCCTGATCCAAAATCTGCTGAG                         TGTCCTTTAGAAAGTTTGGAGCTCGATCTTGCACATTATGAAGTTCCTGC
genomic: AATTCCTGATGTCAGCATTAATCCTGATCCAAAATCTGCTGAGgtactttgtt ... ctcatagcagTGTCCTTTAGAAAGTTTGGAGCTCGATCTTGCACATTATGAAGTTCCTGC