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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGATCCACGAGCTGTGATGGGATTTGGCATATTGAATGGGATATCCATAGGACTATTGAACCTCAGCCTGGGCTTTAATTCTGTCGGTTTTTACCAGgtatagctttttccatttcagttactgcatgatgtgatatccatttttaactagtgttgttctaatttctaacccatcttctgttccgttgataatag

Basic information

species Arabidopsis thaliana
transcript AT1G06890.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G06890.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv06s0004g07960.t01 (Vitis vinifera), 5'ss of exon 4
TTTTGATCCACGAGCTGTGATGGGATTTGGCATATTGAATGGGATATCCATAGGACTATTGAACCTCAGCCTGGGCTTTAATTCTGTCGGTTTTTACCAGgtatagctttttccatttcagttactgcatgatgtgatatccatttttaactagtgttgttctaatttctaacccatc-ttctgttccgttgataatag--
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TTTTGACGCTAGAGCTGTGATGGGATTTGGCATACTAAATGGAACATCCATTGGGCTTTTGAATCTTAGCTTGGGTTTCAATTCTGTTGGTTTCTACCAGgtacatttttatcgtcctctggcatttggttttaaaat-tatgttttcacctaacttttttgcattagaagtgaaatggttttgtaatgtaggtgtttttc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124971619|gb|EL045366.1|EL045366
EST:     TAGGACTATTGAACCTCAGCCTGGGCTTTAATTCTGTCGGTTTTTACCAG                         ATGACTAAACTAGCTATCATCCCCTGCACTGTTCTCTTGGAGACC
genomic: TAGGACTATTGAACCTCAGCCTGGGCTTTAATTCTGTCGGTTTTTACCAGgtatagcttt ... ttgataatagATGACTAAACTAGCTATCATCCCCTGCACTGTTCTCTTGGAGACC