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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAGgtattttgtgcttctctgtactagcggttccaggacataaattctcttctttctttctgatcaagtctgaaatttacgattttag

Basic information

species Arabidopsis thaliana
transcript AT1G06390.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G06390.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 3
ACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAGgtattttgtgcttctctgtactagcggttccaggacataaattct-cttctttctttctgatcaagtctgaaatttacgattttag-------
|| |||||||| ||||| ||||| ||||| ||||| ||||| ||||||||||| || ||||||   ||        | |   |  |  | |    | |  ||| | | | |||   | || |  | ||  |    |    ||||         
ACAATTAGTTATATGGCGGAGCGAGTTGTAGGAACTGGTTCTTTCGGGATTGTGTTCCAGgtacgatgcttggtcttatggaaatgcatgcttaccgtgtattgtacattttttgatatgtttgaatcaaactgatttagttttcacatttag

upper sequence: AT1G06390.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA13G36570.1 (Glycine max), 5'ss of exon 2
ACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAGgta--------ttttgtgcttctctgtactagcggttccaggacataaattctcttctttctttctgatcaagtctga--aatttacgattttag-----------------------------
||||| |||||||||||||| || |||||||| || || |||||||| |||||||| ||||||        |   ||  ||  || |    | | |  | |  | ||  ||   |||  |  |    |  |  ||  |    || ||    || |                             
ACCATCAGTTACATGGCTGAACGTGTTGTTGGCACTGGATCATTCGGAATTGTTTTCCAGgtaaggataagtgaagtaattacctctttaggtgataactgttcctactttgctttccctgctgtcaagtatctcatattgcttcacaccattgggttatgttcctttttgaccggaaacaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86037640|gb|DR333395.1|DR333395
EST:     ACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAG                         GGCGAAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAAAGGTCTTG
genomic: ACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAGgtattttgtg ... acgattttagG-CGAAA-TGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAA-GGTCTTG
EST: gi|125087392|gb|EL146536.1|EL146536
EST:     CATTCGGGATTGTTTTTCAG                         GCGAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAAGGTCTTGCAA
genomic: CATTCGGGATTGTTTTTCAGgtattttgtg ... acgattttagGCGAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAAGGTCTTGCAA
EST: gi|86037629|gb|DR333384.1|DR333384
EST:     ACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAG                         GCGAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAAGGTCTTGCAA
genomic: ACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAGgtattttgtg ... acgattttagGCGAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAAGGTCTTGCAA
EST: gi|86037635|gb|DR333390.1|DR333390
EST:     CATGAGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAG                         GCGAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAAGGTCTTGCAA
genomic: CATG-GCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAGgtattttgtg ... acgattttagGCGAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAAGGTCTTGCAA
EST: gi|86037634|gb|DR333389.1|DR333389
EST:     ACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAG                         GCGAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAAGGTCTTGCAA
genomic: ACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAGgtattttgtg ... acgattttagGCGAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAAGGTCTTGCAA
EST: gi|86037637|gb|DR333392.1|DR333392
EST:     ACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAG                         GCGAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAAGGTCTTGCAA
genomic: ACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAGgtattttgtg ... acgattttagGCGAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAAGGTCTTGCAA
EST: gi|86037633|gb|DR333388.1|DR333388
EST:     ACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAG                         GCGAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAAGGTCTTGCAA
genomic: ACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAGgtattttgtg ... acgattttagGCGAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAAGGTCTTGCAA
EST: gi|86037631|gb|DR333386.1|DR333386
EST:     ACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAG                         GCGAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAAGGTCTTGCAA
genomic: ACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAGgtattttgtg ... acgattttagGCGAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAAGGTCTTGCAA
EST: gi|125319968|gb|EL334053.1|EL334053
EST:     ACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAG                         GCGAAATGCTTGGAAACTGGA
genomic: ACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAGgtattttgtg ... acgattttagGCGAAATGCTTGGAAACTGGA
EST: gi|86037632|gb|DR333387.1|DR333387
EST:     ACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAG                         GCGAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAAGGTCTTGCAA
genomic: ACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAGgtattttgtg ... acgattttagGCGAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAAGGTCTTGCAA
EST: gi|86037630|gb|DR333385.1|DR333385
EST:     ACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAG                         GCGAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAAGGTCTTGCAA
genomic: ACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAGgtattttgtg ... acgattttagGCGAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAAGGTCTTGCAA
EST: gi|86037641|gb|DR333396.1|DR333396
EST:     ACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAG                         GCGAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAAGGTCTTGCAA
genomic: ACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAGgtattttgtg ... acgattttagGCGAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAAGGTCTTGCAA
EST: gi|86037636|gb|DR333391.1|DR333391
EST:     ACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAG                         GCGAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAAGGTCTTGCAA
genomic: ACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAGgtattttgtg ... acgattttagGCGAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAAGGTCTTGCAA