1 5' 3' | 2 5' 3' | 3 5' 3' |
AGAAAGAAAAGTTCCCTAGCGTCAAAGTTCAGTACATTTTCAACTCACCACCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAGgtaagttgctttataaccccctttgctcaactccttgctagaatctttagtattagagtttgggtgggggaacgagttgacctgatttaagacgttcaag...
species | Arabidopsis thaliana |
transcript | AT1G05720.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAG AATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAGAGAAGGTEST: gi|86022918|gb|DR318671.1|DR318671
genomic: CCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAGgtaagttgct ... tgttttgcagAATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAGAGAAGGT
EST: CCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAAATCAATTAG AATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAGAEST: gi|86022908|gb|DR318661.1|DR318661
genomic: CCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAA-TCAATTAGgtaagttgct ... tgttttgcagAATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAGA
EST: CCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAG AATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAGAGAAGGTEST: gi|86022912|gb|DR318665.1|DR318665
genomic: CCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAGgtaagttgct ... tgttttgcagAATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAGAGAAGGT
EST: CCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAG RATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAGAGAAGGTEST: gi|19878749|gb|AU239580.1|AU239580
genomic: CCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAGgtaagttgct ... tgttttgcagAATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAGAGAAGGT
EST: CCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAG AATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAGAGAAGGTEST: gi|164003028|gb|ES176125.1|ES176125
genomic: CCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAGgtaagttgct ... tgttttgcagAATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAGAGAAGGT
EST: CCCAAGTTGATCATGCTCGACGAAGACGGTGTACATAAGGAATCAATTAG AATCGACAACTGGAAACGEST: gi|124939213|gb|EL015773.1|EL015773
genomic: CCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAGgtaagttgct ... tgttttgcagAATCGACAACTGGAAACG
EST: CCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAG AATCGGCAACTGGAAACGCGAACATCTACTGCAGTATAEST: gi|164079129|gb|ES175364.1|ES175364
genomic: CCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAGgtaagttgct ... tgttttgcagAATCGACAACTGGAAACGCGAACATCTACTGCAGTATA
EST: CCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAG AATCGTACAACTGGAAACGCGAACATCTACEST: gi|124773098|gb|EH863227.1|EH863227
genomic: CCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAGgtaagttgct ... tgttttgcagAATCG-ACAACTGGAAACGCGAACATCTAC
EST: GAACATAAGGAATCAATTAG AATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAGAGAAGGTEST: gi|86022917|gb|DR318670.1|DR318670
genomic: GAACATAAGGAATCAATTAGgtaagttgct ... tgttttgcagAATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAGAGAAGGT
EST: CCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAG AATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAGAGAAGGTEST: gi|164049012|gb|EL988354.1|EL988354
genomic: CCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAGgtaagttgct ... tgttttgcagAATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAGAGAAGGT
EST: TTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAG AATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAGAGAAGGTEST: gi|86022913|gb|DR318666.1|DR318666
genomic: TTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAGgtaagttgct ... tgttttgcagAATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAGAGAAGGT
EST: CCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAG AATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAGAGAAGGTEST: gi|164215606|gb|ES001683.1|ES001683
genomic: CCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAGgtaagttgct ... tgttttgcagAATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAGAGAAGGT
EST: TTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAG AATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAGEST: gi|86022914|gb|DR318667.1|DR318667
genomic: TTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAGgtaagttgct ... tgttttgcagAATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAG
EST: CCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAG AATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAGAGAAGGTEST: gi|86022909|gb|DR318662.1|DR318662
genomic: CCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAGgtaagttgct ... tgttttgcagAATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAGAGAAGGT
EST: CCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAG AATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAGAGAAGGTEST: gi|86022911|gb|DR318664.1|DR318664
genomic: CCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAGgtaagttgct ... tgttttgcagAATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAGAGAAGGT
EST: CCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAG AATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAGAGAAGGTEST: gi|124940967|gb|EL017367.1|EL017367
genomic: CCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAGgtaagttgct ... tgttttgcagAATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAGAGAAGGT
EST: CCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAG AATCGACAACTGGAAACGCGAAEST: gi|164149853|gb|ES132643.1|ES132643
genomic: CCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAGgtaagttgct ... tgttttgcagAATCGACAACTGGAAACGCGAA
EST: TTGATCATGCTCGACGAAGACGGTGAACATAA-GAATCAATTAG AATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAGAGAAGGTEST: gi|124863879|gb|EH948316.1|EH948316
genomic: TTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAGgtaagttgct ... tgttttgcagAATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAGAGAAGGT
EST: CCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAG AATCGACAACTGGAAACGEST: gi|86022915|gb|DR318668.1|DR318668
genomic: CCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAGgtaagttgct ... tgttttgcagAATCGACAACTGGAAACG
EST: CCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAG AATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAGEST: gi|86022907|gb|DR318660.1|DR318660
genomic: CCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAGgtaagttgct ... tgttttgcagAATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAG
EST: CCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAG AATCGACAACTGGNAACGCGAACATCTACTGCAGTATATGCGAGAGAAGGT
genomic: CCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAGgtaagttgct ... tgttttgcagAATCGACAACTGGAAACGCGAACATCTACTGCAGTATATGCGAGAGAAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAAGAAAAGTTCCCTAGCGTCAAAGTTCAGTACATTTTCAACTCACCACCCAAGTTGATCATGCTCGACGAAGACGGTGAACATAAGGAATCAATTAGgtaagttgctttataaccccctttgctcaactccttgctagaatctttagtattagagtttgggtgggggaacgagttgacctgatttaagacgttcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccttgct