1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCTTGGTTACTTGCCACCTGAACGTTCACTCTGGTCAACTGAGTTGAAACAAAAGAGATCCCAATACAAGCACTACAAGGATGAGCTTCTGACGAGTCCTgtaagtgatcctggtcttttgtttcttgccttggagttattgttagtctgttagttttgcatgctatgtctgtctaagttgatttcaagtaaccggatta...
species | Arabidopsis thaliana |
transcript | AT1G04830.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAAGAGATCCCAATACAAGCACTACAAGGATGAGCTTTCTGACGAGTCCT TCAGAA-TCACATEST: gi|125161910|gb|EL188829.1|EL188829
genomic: AAAGAGATCCCAATACAAGCACTACAAGGATGAGCTT-CTGACGAGTCCTgtaagtgatc ... tggtagttagTCAGAAATCACAT
EST: AAAAGAGATCCCAATACAAGCACTACAAGGATGAGCTTCTGACGAGTCCT TCAGAAATCACATGGAAAATGGTGAGGTCAAAGGG
genomic: AAAAGAGATCCCAATACAAGCACTACAAGGATGAGCTTCTGACGAGTCCTgtaagtgatc ... tggtagttagTCAGAAATCACATGGAAAATGGTGAGGTCAAAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTGGTTACTTGCCACCTGAACGTTCACTCTGGTCAACTGAGTTGAAACAAAAGAGATCCCAATACAAGCACTACAAGGATGAGCTTCTGACGAGTCCTgtaagtgatcctggtcttttgtttcttgccttggagttattgttagtctgttagttttgcatgctatgtctgtctaagttgatttcaagtaaccggatta
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcttgcc