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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCATCTCGGTCACTTTCTTCTCTCAAGATTGCTTCTTGATGACCTGAAAAAATCTGATTATCCATCAAAACGTATGATCATCGTAGGATCTATAACAGgtaaataacacagacaacttgtccatttccaccaagatagttcctagtatcaaacaatgaatgttcttttctatgttcttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G03630.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G03630.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv12s0059g00270.t01 (Vitis vinifera), 5'ss of exon 3
AACCATCTCGGTCACTTTCTTCTCTCAAGATTGCTTCTTGATGACCTGAAAAAATCTGATTATCCATCAAAACGTATGATCATCGTAGGATCTATAACAGgtaaataacacag----acaacttgtccatttccaccaa-----gatagttcctagtatcaa-acaatgaatgttctt---ttctatgttcttgcag----
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AACCATCTTGGACACTTCCTTCTCTCAAGATTGCTGCTTGATGACCTGAAGCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtac-tagttcaacttcagaacctgccaaggatgtgaaatttttaatgtttcacaatacaaccacagtgaaaaaattgagacttaaaacagtttcaagaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125302420|gb|EL316505.1|EL316505
EST:     AAAATCTGATTATCCATCAAAACGTATGATCATCGTAGGATCTATAACAG                         GAAACACAAATACTTT
genomic: AAAATCTGATTATCCATCAAAACGTATGATCATCGTAGGATCTATAACAGgtaaataaca ... gttcttgcagGAAACACAAATACTTT
EST: gi|125016496|gb|EL088765.1|EL088765
EST:     AATCTGATTATCCATCAAAACGTATGTATCATCGTAGGATCTATAACAG                         GAAACACAAATACTTTGGCTGGGAATGTACCGCCAAAGGCAAACCTTGGAG
genomic: AATCTGATTATCCATCAAAACGTATG-ATCATCGTAGGATCTATAACAGgtaaataaca ... gttcttgcagGAAACACAAATACTTTGGCTGGGAATGTACCGCCAAAGGCAAACCTTGGAG
EST: gi|47830480|gb|CK120164.1|CK120164
EST:     AAAATCTGATTATCCATCAAAACGTATGATCATCGTAGGATCTATAACAG                         GGAACACAAATACTTTGGCTGGGAATGTACCGCC
genomic: AAAATCTGATTATCCATCAAAACGTATGATCATCGTAGGATCTATAACAGgtaaataaca ... gttcttgcagGAAACACAAATACTTTGGCTGGGAATGTACCGCC
EST: gi|86060701|gb|DR356458.1|DR356458
EST:     AAAATCTGATTATCCATCAAAACGTATGATCATCGTAGGATCTATAACAG                         GAAACACAAATACTTTGGCTGGGAATGTACCGCCAAAGGCAAACCTTGGAG
genomic: AAAATCTGATTATCCATCAAAACGTATGATCATCGTAGGATCTATAACAGgtaaataaca ... gttcttgcagGAAACACAAATACTTTGGCTGGGAATGTACCGCCAAAGGCAAACCTTGGAG
EST: gi|47831169|gb|CK120853.1|CK120853
EST:     AAAATCTGATTATCCATCAAAACGTATGATCATCGTAGGATCTATAACAG                         GAAACACAAATACTTTGGCTGGGAATGTACCGCCAAAGGCAAACCTTGGAG
genomic: AAAATCTGATTATCCATCAAAACGTATGATCATCGTAGGATCTATAACAGgtaaataaca ... gttcttgcagGAAACACAAATACTTTGGCTGGGAATGTACCGCCAAAGGCAAACCTTGGAG
EST: gi|124724227|gb|EH815629.1|EH815629
EST:     GTATGATCATCGTAGGATCTATAACTAG                         GAAACACAAATACTTTGGCTGGGAATGTACCGCCAAAGGCAAACCTTGGA
genomic: GTATGATCATCGTAGGATCTATAAC-AGgtaaataaca ... gttcttgcagGAAACACAAATACTTTGGCTGGGAATGTACCGCCAAAGGCAAACCTTGGA
EST: gi|124838660|gb|EH923099.1|EH923099
EST:     GTATGATCATCGTAGGATCTATAACAG                         GAAACACAAATACTTTGGCTGGGAATGTACCGCCAAAGGCAAACCTTGGAG
genomic: GTATGATCATCGTAGGATCTATAACAGgtaaataaca ... gttcttgcagGAAACACAAATACTTTGGCTGGGAATGTACCGCCAAAGGCAAACCTTGGAG
EST: gi|86030094|gb|DR325847.1|DR325847
EST:     AAAATCTGATTATCCATCAAAACGTATGATCATCGTNNNATCTATAACAG                         GAAACACAAATACTTTGGCTGGGGATGTACCGCCAAAGGCAAACCTTGGAG
genomic: AAAATCTGATTATCCATCAAAACGTATGATCATCGTAGGATCTATAACAGgtaaataaca ... gttcttgcagGAAACACAAATACTTTGGCTGGGAATGTACCGCCAAAGGCAAACCTTGGAG