1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCATCTAGTCCGTTGCAAGTTAAGTATGCAGATGGCGAGTTGGAAAGACTAGgtacgcaaaatgcttctgagtgatgaagtctaagcaccaaaagagttctttttttctttctttccagagtttggtcgcattttttaatttttgataccaatcaatttgatag
species | Arabidopsis thaliana |
transcript | AT1G03457.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATCTAGTCCGTTGCAAGTTAAGTATGCAGATGGCGAGTTGGAAAGACTAG ATGTTCTTGACTGTTCGTGCAATCCAGAGCACAAACTTTTCGTCGGTATGCEST: gi|125203382|gb|EL218336.1|EL218336
genomic: ATCTAGTCCGTTGCAAGTTAAGTATGCAGATGGCGAGTTGGAAAGACTAGgtacgcaaaa ... aatttgatagATGTTCTTGACTGTTCGTGCAATCCAGAGCACAAACTTTTCGTCGGTATGC
EST: CCGTTGCAAGTTAAGTATGCAGATGGCGAGTTGGAAAGACTAG ATGTTCTTGACTGTTCGTGCAATCCAGAGCACAAACTTTTCGTCGGTATGC
genomic: CCGTTGCAAGTTAAGTATGCAGATGGCGAGTTGGAAAGACTAGgtacgcaaaa ... aatttgatagATGTTCTTGACTGTTCGTGCAATCCAGAGCACAAACTTTTCGTCGGTATGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATCTAGTCCGTTGCAAGTTAAGTATGCAGATGGCGAGTTGGAAAGACTAGgtacgcaaaatgcttctgagtgatgaagtctaagcaccaaaagagttctttttttctttctttccagagtttggtcgcattttttaatttttgataccaatcaatttgatag
- - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - CAGATG