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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAGGTTGACCTTGTGACAGGAAAAACAGAATTTATAAGATCAGATATTATCTATGACTGTGGTAAAAGCCTTAATCCTGCTATTGATTTAGGACAGgtaattagcttggttttggtccggattctggatgtgcacttaatgttctatcacaggttggttaattggcgtttctgtttgtttactttaag

Basic information

species Arabidopsis thaliana
transcript AT1G02590.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G02590.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv18s0041g02390.t01 (Vitis vinifera), 5'ss of exon 7
GTGGAGGTTGACCTTGTGACAGGAAAAACAGAATTTATAAGATCAGATATTATCTATGACTGTGGTAAAAGCCTTAATCCTGCTATTGATTTAGGACAGgtaattagcttggttttggtccgga----ttctggatgtgcacttaatgttctatcacagg---ttggttaattggcgtttctgtttg---tttactttaag-
||||| ||  | ||| | || ||| ||||   | || |   ||| |||||||| |||||||||||  ||||||| || |||||| | ||||||||||||||    |||     |    ||   |    |||||  |       |  | ||||||  |      ||| |||||      ||   ||     |||||||  |  
GTGGAAGTAAATCTTCTCACTGGAGAAACCACAATTTTGCAATCTGATATTATATATGACTGTGGGCAAAGCCTCAACCCTGCTGTGGATTTAGGACAGgt---cagcccaactacaatcttaaaatattctgtttccttctctgcttttctattcctaagctttgattaatcacaacttgaattcaatttttacttccatt