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AGTGTCAGAAAATGTTCGAACAAGGACAAGTTGATGACCGCTTTCTCATGATTCTGTTCCTCACTTTGGAGCGTCTTCGTATCAATTCTTCTTGGAAGCCgtaagttttttttttaatctcttagcacacatttacgtaagcttaagggtattcatctgtctagaaatgatatgatag
species | Arabidopsis thaliana |
transcript | AT1G01920.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATTCTGTTCCTCACTTTGGAGCGTCTTCGTATCAATTCTTCTTGGAAGCC GTATCTTGATATGCTTCCTACTCGATTTGGCAATCCTCTTTGGTTTTCTGAEST: gi|86069207|gb|DR364964.1|DR364964
genomic: ATTCTGTTCCTCACTTTGGAGCGTCTTCGTATCAATTCTTCTTGGAAGCCgtaagttttt ... gatatgatagGTATCTTGATATGCTTCCTACTCGATTTGGCAATCCTCTTTGGTTTTCTGA
EST: ATTCTGTTCCTCACTTTGGAGCGTCTTCGTATCAATTCTTCTTGGAAGCC GTATCTTGATATGCTTCCTACTCGATTTGGCAATCCTCTTTGGTTTTCTGAEST: gi|19874501|gb|AU235332.1|AU235332
genomic: ATTCTGTTCCTCACTTTGGAGCGTCTTCGTATCAATTCTTCTTGGAAGCCgtaagttttt ... gatatgatagGTATCTTGATATGCTTCCTACTCGATTTGGCAATCCTCTTTGGTTTTCTGA
EST: ATTCTGTTCCTCACTTTGGAGCGTCTTCGTATCAATTCTTCTTGGAAGCC GTATCTTGATATGCTTCCTACTCGATTTGGCAATCCTCTTTGGTTTTCTGA
genomic: ATTCTGTTCCTCACTTTGGAGCGTCTTCGTATCAATTCTTCTTGGAAGCCgtaagttttt ... gatatgatagGTATCTTGATATGCTTCCTACTCGATTTGGCAATCCTCTTTGGTTTTCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGTCAGAAAATGTTCGAACAAGGACAAGTTGATGACCGCTTTCTCATGATTCTGTTCCTCACTTTGGAGCGTCTTCGTATCAATTCTTCTTGGAAGCCgtaagttttttttttaatctcttagcacacatttacgtaagcttaagggtattcatctgtctagaaatgatatgatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG