Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCTGGAGCTCCACAGATTTTCAATGTGgtaagttttttcctactctttgttctaaacagagtatgttgttattagattctctaatcattttatctttggatgattattag

Basic information

species Arabidopsis thaliana
transcript AT1G01050.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152033655|gb|BP561551.2|BP561551
EST:     GACCTGGAGCTCCACAGATTTTCAATGTG                         GTTGTTGAGATCACTAAAGGAAGCAAGGTCAAATACGAGCTTGACAAAAAG
genomic: GACCTGGAGCTCCACAGATTTTCAATGTGgtaagttttt ... tgattattagGTTGTTGAGATCACTAAAGGAAGCAAGGTCAAATACGAGCTTGACAAAAAG
EST: gi|125045488|gb|EL117757.1|EL117757
EST:     ATTGGACCTGGAGCTCCACAGATTTTCAATGTG                         GTTGTTGAGATCACTAAAGGAAGCAAGGTCAAATACGAGCTTGAACAAAAA
genomic: ATTGGACCTGGAGCTCCACAGATTTTCAATGTGgtaagttttt ... tgattattagGTTGTTGAGATCACTAAAGGAAGCAAGGTCAAATACGAGCTTGA-CAAAAA
EST: gi|163968043|gb|ES068352.1|ES068352
EST:     GACCTGGAGCTCCACAGATTTTCAATGTG                         GTTGTTGAGATCACTAAAGGAAGCAAGGTCAAATACGAG
genomic: GACCTGGAGCTCCACAGATTTTCAATGTGgtaagttttt ... tgattattagGTTGTTGAGATCACTAAAGGAAGCAAGGTCAAATACGAG
EST: gi|47828474|gb|CK118158.1|CK118158
EST:     GACCTGGAGCTCCACAGATTTTCAATGTG                         GTTGTTGAGATCACTAAAGGAAGCAAGGTCAAATACGAGCTTGACAAAAAG
genomic: GACCTGGAGCTCCACAGATTTTCAATGTGgtaagttttt ... tgattattagGTTGTTGAGATCACTAAAGGAAGCAAGGTCAAATACGAGCTTGACAAAAAG
EST: gi|124751380|gb|EH841510.1|EH841510
EST:     CTCCACAGATTTTCAATGTG                         GTTGTTGAGATCACTAAAGGAAGCAAGGTCAAATACGAGCTTGACAAAAAG
genomic: CTCCACAGATTTTCAATGTGgtaagttttt ... tgattattagGTTGTTGAGATCACTAAAGGAAGCAAGGTCAAATACGAGCTTGACAAAAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACCTGGAGCTCCACAGATTTTCAATGTGgtaagttttttcctactctttgttctaaacagagtatgttgttattagattctctaatcattttatctttggatgattattag

- -  GGAGCT