Sequence
atgc intronic sequence ATGC exonic sequenceGTATGCAAATGTGAAGACACCTGAACGTCATGTGAGGACTCGACTTTACTTCACATCTgtaagtttcctctttgctccattgcttgtttaagtctgtctatgagtgaaactataatgtttatgcctggtatgatttggaacag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G01310.2 |
intron # | 28 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G01310.2 (Arabidopsis thaliana), 5'ss of exon 28
lower sequence: GLYMA13G05060.1 (Glycine max), 5'ss of exon 41
GTATGCAAATGTGAAGACACCTGAACGTCATGTGAGGACTCGACTTTACTTCACATCTgtaagtttcctctttgc-----tccattgcttgtttaagtctgtcta--tgagtgaaactat-aatgtttat--gcctggtatgatttggaacag-----
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GTATGCAAATGTGAAGACACCTGAGCGCCATGTGCGAACACGCCTCTACTTCACATCAgtaagtgttgtatccacacgcacctataccttgtgtgaatgattttaattaggtaaaaaaattaagggatattaattaggagaaaattgggggatactaa
upper sequence: AT3G01310.2 (Arabidopsis thaliana), 5'ss of exon 28
lower sequence: GLYMA19G02260.1 (Glycine max), 5'ss of exon 25
GTATGCAAATGTGAAGACACCTGAACGTCATGTGAGGACTCGACTTTACTTCACATCTgtaagtttcctctttgc-----tccattgcttgtttaagtctgtctatg-----agtgaaactataatgtttatgcctggtatgatttggaacag-----
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GTATGCAAATGTGAAGACACCTGAGCGCCATGTGCGAACACGCCTCTACTTCACATCAgtgagtgttgtatccgcaaacatctatacctcgtgtcaatgattttatgtaggtaaaaaaattaagggatattaattaggtgaaaattgggggatactaa
upper sequence: AT3G01310.2 (Arabidopsis thaliana), 5'ss of exon 28
lower sequence: GLYMA09G37610.1 (Glycine max), 5'ss of exon 25
GTATGCAAATGTGAAGACACCTGAACGTCATGTGAGGACTCGACTTTACTTCACATCTgtaagtttcctctttg---ctccattgcttgtttaagtctgtctatgagtgaaact---ataatgtttatgcctggtatgatttggaacag---------
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GTATGCAAATGTAAAGACACCAGAACGCCATGTGCGAACACGCCTATACTTCACATCAgtaagtgctgggtcagattttttaataaccgtgaacagaaatttatttttaaacccctcactacctgtagtgtttctgtgatttaaaatatttccattct
upper sequence: AT3G01310.2 (Arabidopsis thaliana), 5'ss of exon 28
lower sequence: Vv14s0066g02540.t01 (Vitis vinifera), 5'ss of exon 27
GTATGCAAATGTGAAGACACCTGAACGTCATGTGAGGACTCGACTTTACTTCACATCTgtaagtttcctctttgctccattgct-tgtttaagtctgtctatgagtgaaactataatgtt-tatgcctggtatgatttggaacag--------------------------------------------------------------
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GTATGCAAATGTGAAGACACCAGAACGCCATGTGCGCACACGCCTCTATTTTACATCAgtgagtttcatacaattctaatgaatatatgtgaaaataaaaaccactggttttcttttcttctgttcattttttggttccttatttgcatgtggtaattttattaaatttaagttggaatctttttttttttttttttgtgataacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125251618|gb|EL265703.1|EL265703EST: ATGTGAAGACACCTGAACGTCATGTGAGGACTCGACTTTACTTCACATCT GAATCGCATATTCATTCGCTCATGAACGT
genomic: ATGTGAAGACACCTGAACGTCATGTGAGGACTCGACTTTACTTCACATCTgtaagtttcc ... tttggaacagGAATCGCATATTCATTCGCTCATGAACGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTATGCAAATGTGAAGACACCTGAACGTCATGTGAGGACTCGACTTTACTTCACATCTgtaagtttcctctttgctccattgcttgtttaagtctgtctatgagtgaaactataatgtttatgcctggtatgatttggaacag
- - - - - TGAAGA