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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTATATGGAGATTCGTAATGCCCTTATTATGTTAACAAAAATATCTGGTGTTTTCCCAGTTACTCGGAAAACTGGGATAAACCTTGAGAAACGGGCAAgtacctcttgacgagctattcttatgaatctgctttcaattagtgtgatttctatctttccctgtgttttttttgtgaaaagattaatctttcctttctttggtggtttggtctttcaggtag

Basic information

species Arabidopsis thaliana
transcript AT1G24706.1
intron # 28
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G24706.1 (Arabidopsis thaliana), 5'ss of exon 28
lower sequence: GLYMA08G05320.1 (Glycine max), 5'ss of exon 24
----GAGTATATGGAGATTCGTAATGCCCTTATTATGTTAACAAAAATATCTGGTGTTTTCCCAGTTACTCGGAAAACTGGGATAAACCTTGAGAAACGGGCAAgtacctcttgacgagctattcttatgaatctgctttcaattagtgtga-tttctatctttccctgtgttttttttgtgaaaagattaatctttcctttctttggtggtttggtctttcaggtag
    ||||| ||||| ||| | ||||| ||||| ||||| |||||||| ||| |||||||||| ||||||||||| | |||||| |||||||| || |||| ||||    |||   |   ||  ||| ||| | ||||   |  || | | |   | ||  |     | ||||   |                                                   
TACTGAGTACATGGAAATTAGAAATGCTCTTATAATGTTGACAAAAATTTCTAGTGTTTTCCCTGTTACTCGGAAGAGTGGGATCAACCTTGAAAAGCGGgtaagttatccttattg---taaactt-tgattgtgctagtatataatattagcatttaagtcattttatgttccatgcag-----------------------------------------------

upper sequence: AT1G24706.1 (Arabidopsis thaliana), 5'ss of exon 28
lower sequence: GLYMA05G34330.1 (Glycine max), 5'ss of exon 27
----GAGTATATGGAGATTCGTAATGCCCTTATTATGTTAACAAAAATATCTGGTGTTTTCCCAGTTACTCGGAAAACTGGGATAAACCTTGAGAAACGGGCAAgtacctcttgacgagctattcttatgaatctgctttcaattagtgtgatttctatctttccctgtgttttttttgtgaaaagattaatctttcctttctttggtggtttggtctttcaggtag
    ||||| ||||| ||| | ||||| ||||| ||||| |||||||| ||| |||||||||| ||||||||||| | |||||| |||||||| || |||| ||||    |||   |   ||| ||| ||| | ||||   ||||      |||   || |    |    | | ||   || |                                            
TACCGAGTACATGGAAATTAGAAATGCTCTTATAATGTTGACAAAAATTTCTAGTGTTTTCCCTGTTACTCGGAAGAGTGGGATCAACCTTGAAAAGCGGgtaagttatccttattg---tatactt-tgattgtgctagtaatttaaaatattagcatttaagtcatgttatcttccatgcag-------------------------------------------