Sequence
atgc intronic sequence ATGC exonic sequenceATTTTCCCATCAACTGAAAGAATTGAGAATATAAATGACCAGTACTGGACTTTACGAGCTGAGGAGgtatattactaggctgcaccttgtatttttcttagatctcacatcacagcatttttggtatcttctaattcttagtggtcttgctgttcattagttattt...
Basic information
species | Arabidopsis thaliana |
transcript | AT5G06600.2 |
intron # | 27 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G06600.2 (Arabidopsis thaliana), 5'ss of exon 27
lower sequence: LOC_Os11g36470.1 (Oryza sativa), 5'ss of exon 23
ATTTTCCCATCAACTGAAAGAATTGAGAATATAAATGACCAGTACTGGACTTTACGAGCTGAGGAGgtatattac-------taggctgcaccttgtatt---tttcttagatc-tcacatcacagcatttttggtatctt--ctaattcttagtg-gtcttgctgttcattagttattt----------------------
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ATTTTTCCACTCCATGAGAAGATAGAGAATATTAATGATCAGTACTGGACACTACGTGCTGAGGAGgtatgtaatgttctttttggttgcatttggtgctccatttcgtgaactgtaaagttgcaatctatttcatttcctgcttgtgtcaaaatgtgcgccttcattctatcctcatatctgcttctgcttattggtacag
upper sequence: AT5G06600.2 (Arabidopsis thaliana), 5'ss of exon 27
lower sequence: GRMZM2G014805_T01 (Zea mays), 5'ss of exon 27
ATTTTCCCATCAACTGAAAGAATTGAGAATATAAATGACCAGTACTGGACTTTACGAGCTGAGGAGgt--atattactaggctgcaccttgtattt-ttcttagatct--cacatcacagcatttttggtatcttct----aattcttagtggtcttgctgttcattagttattt----------------------------------
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ATTTTTCCGCCTCATGAGAAGATAGAGAACATAAATGATCAGTACTGGACATTACGAGCTGAGGAGgttcgtattatttcatttt-cttgatgttgaccctttgacctattctattgaaaaaatacaactaatttatgtagattaatctgcgatacttctgtatagttgtcgattgtcgtgcatgacactactgtcaattttgaaacag
upper sequence: AT5G06600.2 (Arabidopsis thaliana), 5'ss of exon 27
lower sequence: GRMZM2G303655_T01 (Zea mays), 5'ss of exon 17
ATTTTCCCATCAACTGAAAGAATTGAGAATATAAATGACCAGTACTGGACTTTACGAGCTGAGGAGgt--atattactaggctgcaccttgtattt-ttcttagatctcacatcacagcatttt--tggtatcttctaattcttagtggtcttgctgttcattagttattt---------------------------------
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ATCTTTCCACCTCATGAGAAGATAGAGAACATAAATGATCAGTACTGGACATTACGAGCTGAGGAGgtttgtattgtttcatttt-cttgatgttgacccttcgatctattctaaaaaaaatacaattatatttacgaagattcatctgtgatacttatgtaaagttgtcttgcataacactgcatctgtcaattttggaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86055114|gb|DR350871.1|DR350871EST: AAAGAATTGAGAATATAAATGACCAGTACTGGACTTTACGAGCTGAGGAG ATTCCGGAAGAAGAGAAGAATATTGGTCCAAATGATCGCTTAATTCTTGTG
genomic: AAAGAATTGAGAATATAAATGACCAGTACTGGACTTTACGAGCTGAGGAGgtatattact ... ttaatcgcagATTCCGGAAGAAGAGAAGAATATTGGTCCAAATGATCGCTTAATTCTTGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTTTCCCATCAACTGAAAGAATTGAGAATATAAATGACCAGTACTGGACTTTACGAGCTGAGGAGgtatattactaggctgcaccttgtatttttcttagatctcacatcacagcatttttggtatcttctaattcttagtggtcttgctgttcattagttattt
- - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG