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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGATATAGGTCTCGCAATGGGTATCCAAGGCACCGAAGTTGCAAAGGAAAAGTCAGACATCATTATCTTGGATGACAACTTTGAATCCGTTGTGAAGgtttgtatccttagaaaccaaggattcaaatttcttataaaagaagctcctttttgatactcttctgttgcgtgatacttttggaatttcttttcctcgtaaatgtcctcctttgggctttggggctatttgtgatctttttaattatcctgaattagatatccattttaataatcgtctcattcctatag

Basic information

species Arabidopsis thaliana
transcript AT4G29900.1
intron # 27
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G29900.1 (Arabidopsis thaliana), 5'ss of exon 27
lower sequence: LOC_Os04g51610.3 (Oryza sativa), 5'ss of exon 26
GCAGATATAGGTCTCGCAATGGGTATCCAAGGCACCGAAGTTGCAAAGGAAAAGTCAGACATCATTATCTTGGATGACAACTTTGAATCCGTTGTGAAGgtttgtatccttagaaaccaaggattcaaatttcttataaaagaagctcctttttgatactcttctgttgcgtgatacttttggaatttcttttcctcgtaaatgtcctcctttgggctttggggctatttgtgatctttttaattatcctgaattagatatccattttaataatcgtctcattcctatag
||||||||||||||| | ||||| ||||| || || |||||||| ||||| |  || || || || |||||||||||||| |||| ||| || |||| ||| ||||  ||  |    |    |||      |   || |  | | ||    | |  || |||| | |  ||     ||||| |                                                                                                           
GCAGATATAGGTCTCTCCATGGGCATCCAGGGAACTGAAGTTGCCAAGGAGAGTTCTGATATTATCATCTTGGATGACAATTTTGCATCGGTCGTGAGGgtatgtacact--gtgttctgttatt--ggccttccatgactgcaact----tatagtattcttttctctcg-----cttttag-----------------------------------------------------------------------------------------------------------

upper sequence: AT4G29900.1 (Arabidopsis thaliana), 5'ss of exon 27
lower sequence: GLYMA09G06890.1 (Glycine max), 5'ss of exon 25
GCAGATATAGGTCTCGCAATGGGTATCCAAGGCACCGAAGTTGCAAAGGAAAAGTCAGACATCATTATCTTGGATGACAACTTTGAATCCGTTGTGAAGgtttgta-tccttagaaaccaaggattcaaatttcttataaaagaagctcctttttgatactcttctgttgcgtgatacttttggaatttcttttcctcgtaaatgtcctcctttgggctttggggctatttgtgatctttttaattatcctgaattagatatccattttaataatcgtctcattcctatag
|| ||||||||||| ||||||||||||||||| || |||||||| || || |  || || |||||||| ||||||||||| ||||  || |||||||||||||||| | ||| || |      |||   |||| ||          ||  ||||||  | |  |  || |      |||||| |||      ||   |    |     |  | | |   |  ||   ||||   ||    | ||  |      ||  |||  | ||| |  |  ||    |||   | |||
GCCGATATAGGTCTTGCAATGGGTATCCAAGGTACAGAAGTTGCCAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAGgtttgtactactttgagat-----atttttatttgtt----------ctgttttttgccattagta-gtggaaatgcactttttgaacactgattgtacaatgagaggtttatatagaagtgaggtgcatttaatat----tgaagcacaactgat--gatgacaattgtgtttctc----catggttgtag

upper sequence: AT4G29900.1 (Arabidopsis thaliana), 5'ss of exon 27
lower sequence: GLYMA15G18180.1 (Glycine max), 5'ss of exon 25
GCAGATATAGGTCTCGCAATGGGTATCCAAGGCACCGAAGTTGCAAAGGAAAAGTCAGACATCATTATCTTGGATGACAACTTTGAATCCGTTGTGAAGgtttgtatc-cttagaaaccaaggattcaaatttcttataaaagaagctcctttttgatactcttctgttgcgtgatacttttggaatttcttttcctcgtaaatgtcctcctttgggctttggggctatttgtgatctttttaattatcctgaattagatatccattttaataatcgtctcattcctatag
|| ||||||||||| ||||||||||||||||| || |||||||| || || |  || || |||||||| ||||||||||| ||||  || |||||||||||| |||   ||| || |      |||  ||||| || |         |  ||| | ||        || |      |||||| ||||     ||   |    |     |  | | |  ||  ||   |||   ||   ||| ||  |      ||  |||  | ||| |  |  ||    |||   | |||
GCCGATATAGGTCTAGCAATGGGTATCCAAGGTACAGAAGTTGCCAAAGAGAGCTCCGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAGgttagtactactttgagat-----attttaatttgttctg--------ttttttgtcattagtagaagtagaaatgcactttttgaatactgattgtacaatgagaggtttatatagaattgaggtgcatt---gaatatttgaagcacaactgat--gatgacaattgtttttctc----catggttgtag

upper sequence: AT4G29900.1 (Arabidopsis thaliana), 5'ss of exon 27
lower sequence: GLYMA17G06520.1 (Glycine max), 5'ss of exon 28
GCAGATATAGGTCTCGCAATGGGTATCCAAGGCACCGAAGTTGCAAAGGAAAAGTCAGACATCATTATCTTGGATGACAACTTTGAATCCGTTGTGAAGgtttgt----atccttagaaaccaaggattcaaatttcttataaaagaagctcctttttgatactcttctgttgcgtga-tacttttggaatttcttttcctcgtaaatgtcctcctttgggctttggggctatttgtgatctttttaattatcctgaattagatatccattttaataatcgtctcattcctatag
|| ||||| ||||| ||||||||||||||||| || |||||||| || || |  || || |||||||| ||||||||||| ||||  || |||||||||||| ||    ||   |       |||  ||  || |  |  || ||      | | ||| | |     || |||   || || || ||| ||| |||                                                                                                   
GCCGATATTGGTCTTGCAATGGGTATCCAAGGTACAGAAGTTGCTAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAGgttagtcctcatttcttatttggaagattttgaactgttcttataaatgatgcatgtttaacatctaccttttgaaggactatttctggcattacttgaa------------------------------------------------------------------------------------------------

upper sequence: AT4G29900.1 (Arabidopsis thaliana), 5'ss of exon 27
lower sequence: GLYMA13G00420.1 (Glycine max), 5'ss of exon 26
GCAGATATAGGTCTCGCAATGGGTATCCAAGGCACCGAAGTTGCAAAGGAAAAGTCAGACATCATTATCTTGGATGACAACTTTGAATCCGTTGTGAAGgtttgtatccttagaaaccaaggattcaaatttcttataaaagaagctcctttttgatactcttctgttgcgtgatacttttggaatttcttttcctcgtaaat--gtcctc-ctttgggctttggggctatttgtgatctttttaattatcctgaattagatatccattttaataatcgtctcattcctatag
|| ||||| ||||| ||||||||||||||||| || |||||||| || || |  || || |||||||| ||||||||||| ||||  || |||||||||||| |    |                   |||||||||   |||       |||||| ||| ||||  |   |||| |   |   |  |||  |  | | |  |  || |||  ||  ||| ||                                                                      
GCCGATATTGGTCTTGCAATGGGTATCCAAGGTACAGAAGTTGCTAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAGgttagccctc-------------------atttcttatttgagaga-----ttttga-actgttcttataaatgatgcacgtttgacatctactttttgaaggttagtactcatttctggcatta---------------------------------------------------------------------

upper sequence: AT4G29900.1 (Arabidopsis thaliana), 5'ss of exon 27
lower sequence: Vv11s0052g00320.t01 (Vitis vinifera), 5'ss of exon 28
GCAGATATAGGTCTCGCAATGGGTATCCAAGGCACCGAAGTTGCAAAGGAAAAGTCAGACATCATTATCTTGGATGACAACTTTGAATCCGTTGTGAAGgtttgtatccttagaaaccaaggattcaaatttcttataaaagaagctcctttttgatactcttctgttgcgtgatacttttggaatttcttttcctcgtaaatgtcctcctttgggctttggggctatttgtgatctttttaattatcctgaattagatatccattttaataatcgtctcattcctatag
|||||||| ||||| |||||||| ||   ||| || || |||||||| || |  || ||||||||||||||||||||||| ||||  || ||||| |||||| || |    |       || |||  || |  | |  |   ||  |     |   | |   ||       |||   ||||     | |  |       |||                                                                                        
GCAGATATTGGTCTTGCAATGGGCATTTCAGGAACAGAGGTTGCAAAAGAGAGCTCTGACATCATTATCTTGGATGACAATTTTGCGTCAGTTGTCAAGgttagtctgtgcattgtaagagtattttaagtgatcaatagcaaatatgtaaatgactgcaactcccacaaatgaatgttttca---tccaatcttgaacaaa----------------------------------------------------------------------------------------

upper sequence: AT4G29900.1 (Arabidopsis thaliana), 5'ss of exon 27
lower sequence: EFJ22392 (Selaginella moellendorffii), 5'ss of exon 22
GCAGATATAGGTCTCGCAATGGGTATCCAAGGCACCGAAGTTGCAAAGGAAAAGTCAGACATCATTATCTTGGATGACAACTTTGAATCCGTTGTGAAGgtttgtatccttagaaaccaaggattcaaatttcttataaaagaagctcctttttgatactcttctgttgcgtgatacttttggaatttcttttcctcgtaaatgtcctcctttgggctttggggctatttgtgatctttttaattatcctgaattagatatccattttaataatcgtctcattcctatag
|| ||||| |||||  ||||||| |||||||| ||||| || || || ||||  |||||||| || ||  ||||||||||||||| ||| ||||| |||||  |      ||  | |    | | | |   ||| |   |   |  | |||   |                                                                                                                                       
GCTGATATCGGTCTTTCAATGGGCATCCAAGGGACCGAGGTGGCCAAAGAAAGCTCAGACATTATAATTCTGGATGACAACTTTGCATCTGTTGTCAAGgtaaga-----taacagcttttggtgcgag--tctgaaggatcgaaattcttgcag---------------------------------------------------------------------------------------------------------------------------------------