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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAAAGAAAGATAACATGTACAAGGACTGTATGGAAACTGCTTCGCAATCCGGCGACCATGATCTTGCAGAACAACTTCTCGTCTACTTCATTGAACAGgtatggataggtttcaggcaggattacatcgaaagccattagtctattttcaactttttaccgtatatggtaaaacagaaagactattggtactgaagatgaaatttacatccccgttgttgtatgttgtgctggttttacag

Basic information

species Arabidopsis thaliana
transcript AT3G11130.1
intron # 27
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 27
lower sequence: GRMZM5G822591_T01 (Zea mays), 5'ss of exon 4
GTCAAAGAAAGATAACATGTACAAGGACTGTATGGAAACTGCTTCGCAATCCGGCGACCATGATCTTGCAGAACAACTTCTCGTCTACTTCATTGAACAGgtatggataggtttcaggcaggattacatcgaaagccattagtctattttcaactttttaccgtatatg--gtaaaa---cagaaagactattggtactgaagatgaaatttacatccccgttgttgtatgttgtgctggttttacag
 |||||||||||||||||||||||||| |||||||| ||    || ||||| || |||| ||| ||  ||||  |  | || ||||| ||||| || ||||| ||| |      ||  |          |  |    |  || ||| |   ||  |  | | ||||| |  ||||      ||   | ||| | |   |     |   |||  ||  | | |      ||||    | |         
ATCAAAGAAAGATAACATGTACAAGGATTGTATGGAGACATGCTCACAATCTGGTGACCGTGAACTGTCAGAGGACTTGCTTGTCTATTTCATCGAGCAGgtttggttcaaacccattc----ccttgactgatattacgagactagtgataagctaattcagtatacgccgtaaggtcctagtctgtctacttggcatagcattctgattagcaaacacatccaatcatgtaacacag---------

upper sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 27
lower sequence: GRMZM5G804382_T01 (Zea mays), 5'ss of exon 4
GTCAAAGAAAGATAACATGTACAAGGACTGTATGGAAACTGCTTCGCAATCCGGCGACCATGATCTTGCAGAACAACTTCTCGTCTACTTCATTGAACAGgtatggataggtttcaggcaggattacatcgaaagccattagtctattttcaactttttaccgtatatggtaaaacagaaagacta-ttggtactgaagatgaaatttacatccccgttgttgtatgttgtgctggttttacag
 |||||||||||||||||||||||||| |||||||| ||    || ||||| || |||| ||| ||  ||||  |  | || || || || || || ||||| ||| |      ||       ||  || ||  |  | ||    | |  | |     ||    ||| |||     ||   | ||| |||| | || |  |   |||  ||   || |   |  ||||    | |         
ATCAAAGAAAGATAACATGTACAAGGATTGTATGGAGACATGCTCACAATCTGGTGACCGTGAACTGTCAGAGGACTTGCTTGTGTATTTTATCGAGCAGgtttggttgaaaccca-------ttctattgactgataatatgagactagcgataagctaattcataaggtcc--tagtctgtctacttggcattgcat-tctgattagcaaatccatccattcatgtaacacag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116461287|gb|EG503879.1|EG503879
EST:     CCGGCGATCATGATCTTGCAGAACAACTTCTCGTCTACTTCATTGAACAG                         GGGAAAAAGGAATGCTTTGCTACATGTCTCTTTGTCTGTTATGACTTAATC
genomic: CCGGCGACCATGATCTTGCAGAACAACTTCTCGTCTACTTCATTGAACAGgtatggatag ... ggttttacagGGGAAAAAGGAATGCTTTGCTACATGTCTCTTTGTCTGTTATGACTTAATC
EST: gi|125248636|gb|EL262721.1|EL262721
EST:     CCGGCGACCATGATCTTGCAGAACAACTTCTCGTCTACTTCATTGAACAG                         GGGAAAAAGGAATGCTTTGCTACATGTCTCTTTGTCTGTTATGACTTAA
genomic: CCGGCGACCATGATCTTGCAGAACAACTTCTCGTCTACTTCATTGAACAGgtatggatag ... ggttttacagGGGAAAAAGGAATGCTTTGCTACATGTCTCTTTGTCTGTTATGACTTAA