Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   		30  
 5'  3'   		31  
 5'  3'   		32  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACTACGAAGGTTGGACAGTGTTTCACGATCACCGATATATGCATCGTTCACGGAGACACTTGATGGGTCATCAACTATCAGGGCTTTTAAGTCTGAGgtagttttggttctgcttctaaatgtcaggttttgcttctccattaatgacaaaactgtatgctaattccggtttgcatgacag

Basic information

species Arabidopsis thaliana
transcript AT2G07680.1
intron # 27
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G07680.1 (Arabidopsis thaliana), 5'ss of exon 27
lower sequence: LOC_Os06g08560.1 (Oryza sativa), 5'ss of exon 27
GGAACTACGAAGGTTGGACAGTGTTTCACGATCACCGATATATGCATCGTTCACGGAGACACTTGATGGGTCATCAACTATCAGGGCTTTTAAGTCTGAGgta-gt--------tttggttctgcttctaaatgtca--ggttttgcttctccattaatg-acaaaactgtatgcta-attccggtttgc--atgacag--------------------------------------------------
 ||| ||||| |  | ||||||||| | || ||||| |||||| |||| || || |||||||||||||| |||||||| || || || ||| |    || ||| ||        | | |   |  |   |||||  |     ||| |     |||| |   |||||| ||  || || |     ||| ||   || ||                                                   
TGAAGTACGACGACTTGACAGTGTTGCTCGTTCACCAATATATTCATCTTTTACAGAGACACTTGATGGTTCATCAACAATAAGAGCATTTCAAAAAGAAgtatgtcaactgcatctagactttttctgaaatgatactaaatttacccgaacatttacatacaaaattgactgttagaacattgttcgctagtggcaatcgctggcatggtttgtttgggatactgaccgtggtagtataacatatag

upper sequence: AT2G07680.1 (Arabidopsis thaliana), 5'ss of exon 27
lower sequence: GLYMA13G44750.1 (Glycine max), 5'ss of exon 19
GGAACTACGAAGGTTGGACAGTGTTTCACGATCACCGATATATGCATCGTTCACGGAGACACTTGATGGGTCATCAACTATCAGGGCTTTTAAGTCTGAGgtagttttggt-tctgcttctaaatgtcaggttttgct----tctccattaatgacaaaactgtat-gctaattccggtttgcatgacag----------
 ||  |||||||  ||||||||||||| || || || |||||| |||| ||||| || ||||||||||| ||||||||||| ||||| |||||| ||||||||  | ||   | |     |||   |||    | |      | || | ||      | |  | || |||  | | ||| || | ||             
AGAGTTACGAAGACTGGACAGTGTTTCTCGTTCTCCAATATATACATCTTTCACTGAAACACTTGATGGATCATCAACTATTAGGGCATTTAAGGCTGAGgtaaatatgtcattttaaagtaataatcataaatagaaaaaatgtctaataccatttatagagcatagctgttacaggtgtggaagaacactgaatgact

upper sequence: AT2G07680.1 (Arabidopsis thaliana), 5'ss of exon 27
lower sequence: Vv09s0018g00310.t01 (Vitis vinifera), 5'ss of exon 19
GGAACTACGAAGGTTGGACAGTGTTTCACGATCACCGATATATGCATCGTTCACGGAGACACTTGATGGGTCATCAACTATCAGGGCTTTTAAGTCTGAGgtagttt--tggttctgcttctaaatgtcaggttttgcttctccattaatgacaaaac-tgtatgctaattccggtttgcatgacag--------------
|||||| ||| |||| ||||||||||| || || || || | |||||| || || || ||||| ||||| ||||||||||| ||||| ||||||| |||||||      || || || ||| ||||  || ||  |   | || || ||||  |  || | | |  ||  |||     | || | |               
GGAACTTCGACGGTTAGACAGTGTTTCTCGTTCTCCCATTTTTGCATCATTTACAGAAACACTAGATGGATCATCAACTATAAGGGCATTTAAGTGTGAGgtacacaaatgtttttgtttcgaaattacatgtcattact-tcaataaatggtagtacattttttttatctccatcaagtatcagaacacatggtccctaa