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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTCGCGAGGAATTCAAGTCTTGCACAATGCTTGTTATTGCTCACAGGTTGAATACCATCATCGACTGTGACAAGATTCTTGTGCTTAGTTCTGGTCAGgtaatgccaggattacttattcatggaactgacttattatatattctcttcagaaatggataaaagggattcttgtgtggcttacataaaactattggaaatgccaattttgttag

Basic information

species Arabidopsis thaliana
transcript AT1G30410.1
intron # 27
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G30410.1 (Arabidopsis thaliana), 5'ss of exon 27
lower sequence: Vv10s0003g04460.t01 (Vitis vinifera), 5'ss of exon 7
CATTCGCGAGGAATTCAAGTCTTGCACAATGCTTGTTATTGCTCACAGGTTGAATACCATCATCGACTGTGACAAGATTCTTGTGCTTAGTTCTGGTCAGgtaatgccaggattacttattcatggaa---ctgacttattatatattctcttcagaaatggataaaagg-gattcttgtgtg-gcttacataaaact-attggaaatgccaat-tttgttag-----------------------------------
|||||| ||||| |||||  | |||||||||||| ||||||||||| |  | |||||||| ||||||||||||  ||| ||||| |||  ||||||||||||||||  |   || |  | |    |     ||   |  | ||  |      |   |  ||| |   ||  |||    |  |   |||  || ||| | |   | ||||  ||| |||| ||                                    
CATTCGAGAGGAGTTCAAAACATGCACAATGCTTATTATTGCTCACCGACTAAATACCATAATCGACTGTGACCGGATCCTTGTCCTTGATTCTGGTCAGgtaatgttattcttgccaactttctggtttcctacttggtaatgcaccagtgtagcatctgggtttgagaagatgaaggcttacacttcaatgaaattcacatggaatgttaatatttgataactcactagttagaacctgtttgacatttctttcag

upper sequence: AT1G30410.1 (Arabidopsis thaliana), 5'ss of exon 27
lower sequence: Vv10s0003g04470.t01 (Vitis vinifera), 5'ss of exon 26
CATTCGCGAGGAATTCAAGTCTTGCACAATGCTTGTTATTGCTCACAGGTTGAATACCATCATCGACTGTGACAAGATTCTTGTGCTTAGTTCTGGTCAGgtaatgccaggattacttattcatggaactgacttattatatattc-----tcttcagaaatggataaaagggattcttg----tgtggcttacataaaactattggaaatgccaattttgttag-----------------------------
 || || || ||||||||  | ||||| ||||||||||||||||||||  | ||||||||||| || |||||   ||||||||| |||  | ||||||||||| |||  |||||     || ||       ||||  |   |   |     |  |   ||  | |||   ||| ||   |    ||  ||  |    ||    ||| ||     | |  || |                               
TATCCGAGAAGAATTCAAAACATGCACCATGCTTGTTATTGCTCACAGACTAAATACCATCATTGATTGTGATCGGATTCTTGTCCTTGATGCTGGTCAGgta-tgcatggattttgagtttatcttgaaaactttctgggttcccggtaatgcttttaagggtatatctgggtttggggaaaatgcagcaaattcgaatgagttgaaatcaggagtcatgcttaagttagaaatctctggcctttcttctcag

upper sequence: AT1G30410.1 (Arabidopsis thaliana), 5'ss of exon 27
lower sequence: EFJ10057 (Selaginella moellendorffii), 5'ss of exon 24
CATTCGCGAGGAATTCAAGTCTTGCACAATGCTTGTTATTGCTCACAGGTTGAATACCATCATCGACTGTGACAAGATTCTTGTGCTTAGTTCTGGTCAGgtaatgccaggattacttattcatggaactgacttattatatattctcttcagaaatggataaaagggattcttgtgtggcttacataaaactattggaaatgccaattttgttag
 || ||||| |||||     | || || |||||  | || || |||||| |||| |||||||||||||||||||| ||||| ||||||  | ||||  |||||      |   |  | ||   ||   |     || || | |     |||||                                                               
AATCCGCGAAGAATTTCGCGCATGTACCATGCTCATCATCGCGCACAGGCTGAACACCATCATCGACTGTGACAAAATTCTCGTGCTTGATGCTGGCAAGgta-----ggagatggtcatgagtgttgcaagtataata-acaccgctttcag---------------------------------------------------------------

upper sequence: AT1G30410.1 (Arabidopsis thaliana), 5'ss of exon 27
lower sequence: EFJ34932 (Selaginella moellendorffii), 5'ss of exon 24
CATTCGCGAGGAATTCAAGTCTTGCACAATGCTTGTTATTGCTCACAGGTTGAATACCATCATCGACTGTGACAAGATTCTTGTGCTTAGTTCTGGTCAGgtaatgccaggattacttattcatggaactgacttattatatattctcttcagaaatggataaaagggattcttgtgtggcttacataaaactattggaaatgccaattttgttag
 || ||||| |||||     | || || |||||  | || || |||||| |||| |||||||||||||||||||| ||||| ||||||  | ||||  |||||      |   |  | ||   ||   |     || || | |     |||||                                                               
AATCCGCGAAGAATTTCGCGCATGTACCATGCTCATCATCGCGCACAGGCTGAACACCATCATCGACTGTGACAAAATTCTCGTGCTTGATGCTGGCAAGgta-----ggagatggtcatgagtgttgcaagtgtaata-acaccgctttcag---------------------------------------------------------------