Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   		30  
 5'  3'   		31  
 5'  3'   		32  
 5'  3'   		33  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATCAGTCTATGAACATGAGTGCGGAAACATGCCAGGGTTTGCTGTTTATTATAGATACCCGAACAGCCAGCGTGTCACATTTGGACAATTTGTGAAGgtttgaaattctgatccctgacttgtatatctattacttttagtcgtataaactttttaacttgtctcaagttttaggtgatataaactctagaactgtcttctacagtatttagctatcacgtgttctgcttcaattaatggtaacaaagtcttgttccttctgtgtttcatgtctgtttcatctgttgatctgaaag

Basic information

species Arabidopsis thaliana
transcript AT1G24706.2
intron # 27
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G24706.1 (Arabidopsis thaliana), 5'ss of exon 27
lower sequence: GLYMA05G34330.1 (Glycine max), 5'ss of exon 26
AGAATCAGTCTATGAACATGAGTGCGGAAACATGCCAGGGTTTGCTGTTTATTATAGATACCCGAACAGCCAGCGTGTCACATTTGGACAATTTGTGAAGgtttgaaattctgatccctgacttgtatatctattacttttagtcgtataaactttttaacttgtctcaagttttaggtgatataaactctagaactgtcttctacagtatttagctatcacgtgttctgcttcaattaatggtaacaaagtcttgttccttctgtgtttcatgtctgtttcatctgttgatctgaaag
 |||||  | ||||||| |||||| ||||||||||| || |||||||| || |||||||| ||||| |||||||| || |||| ||| || ||  | |||||   || ||||  |   || || || ||   | |  | | | |  |  |   ||  |   |      || | |        ||||| | |||||    ||| |                                                                                               
TGAATCTATTTATGAACGTGAGTGTGGAAACATGCCTGGCTTTGCTGTCTACTATAGATATCCGAATAGCCAGCGAGTTACATATGGCCAGTTCATTAAGgt--aaagttctagtgtatg-ctggtttaa--actggtgtgaattatcaatgattgattgttaaaactaaatgtggtcacgaataaattttagaaaaaccttttt----------------------------------------------------------------------------------------------

upper sequence: AT1G24706.1 (Arabidopsis thaliana), 5'ss of exon 27
lower sequence: GLYMA08G05320.1 (Glycine max), 5'ss of exon 23
AGAATCAGTCTATGAACATGAGTGCGGAAACATGCCAGGGTTTGCTGTTTATTATAGATACCCGAACAGCCAGCGTGTCACATTTGGACAATTTGTGAAGgtttgaaattctgatccctgacttgtatatctattacttttagtcgtataaactttttaacttgtctcaagttttaggtgatataaactctagaactgtcttctacagtatttagctatcacgtgttctgcttcaattaatggtaacaaagtcttgttccttctgtgtttcatgtctgtttcatctgttgatctgaaag
 |||||  | ||||||| |||||| ||||||||||| || || ||||||||||||||||| || || || ||||| || |||| ||| || ||  | |||||  |   |  ||    |||  ||  |    | | | || |    |  | |   ||  ||||      || | | |      ||||| | |||||   | ||   |                                                                                             
TGAATCTATTTATGAACGTGAGTGTGGAAACATGCCTGGCTTCGCTGTTTATTATAGATATCCAAATAGTCAGCGAGTTACATATGGGCAGTTCATTAAGgtaagttgtagtgtatgctggtttaaactggtgtgaattatcaatgattgattgttaaaact------aaatgtgatcatgaataaattttagaaaaatgtttccc---------------------------------------------------------------------------------------------

upper sequence: AT1G24706.1 (Arabidopsis thaliana), 5'ss of exon 27
lower sequence: Vv01s0011g06090.t01 (Vitis vinifera), 5'ss of exon 7
AGAATCAGTCTATGAACATGAGTGCGGAAACATGCCAGGGTTTGCTGTTTATTATAGATACCCGAACAGCCAGCGTGTCACATTTGGACAATTTGTGAAGgtt--tgaaattctgatccctgacttgtatatctattacttttagtcgtataaactttttaacttgtctcaagttttaggtgatataaactctagaactgtcttctacagtatttagctatcacgtgttctgcttcaattaatggtaacaaagtcttgttccttctgtgtttcatgtctgtttcatctgttgatctgaaag
 |||||| | |||||||  ||||| || ||||||||||| |||||||| ||||||||||| || ||||| ||||||||||||| ||| || ||| | |||||   |||    ||   | || |   ||  ||  ||| | ||| ||   ||   ||| || | |||  |  | |  |  |   |  |   ||     |||  |                                                                                                  
TGAATCAATATATGAACGGGAGTGTGGGAACATGCCAGGCTTTGCTGTCTATTATAGATATCCTAACAGTCAGCGTGTCACATATGGCCAGTTTATTAAGgtgagtgagcccctagacacttaagagtcgat--attgccttt-gtgaaatttccttgttgaattgaatagattcattagcagttcattttcacattctgatt--------------------------------------------------------------------------------------------------