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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCAATGACAAACTTCTGCTGGTACAATCTCTGAGACGACAAGGGCATGTTGTTGCTGTCACCGGGGATGGGACAAATGATGCTCCTGCATTGCACGAGgtatagtaatttactgaaatttaaactgataatgtcgaaagctacatctaactgaaagtttcttttggccaagtattttgcctacgtttttactcagcgagcggatcattatctcattggtgttaaattttttgagtgtatttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G57110.1
intron # 26
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G57110.1 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: LOC_Os02g08010.1 (Oryza sativa), 5'ss of exon 8
TCCCAATGACAAACTTCTGCTGGTACAATCTCTGAGACGACAAGGGCATGTTGTTGCTGTCACCGGGGATGGGACAAATGATGCTCCTGCATTGCACGAGgtatagtaatttactg--aaatttaaactgataatgtcgaaagctacatctaactgaaagtttcttttggccaagtattttgcctacgtttttactcagcga-gcggatcattatctcattggtgt-taaattttttgagtgtatttgcag
||| | |||||||||||| || ||| || | |||| |    ||||  ||||||||||||| || || ||||| || |||||||||||||||||||| |||||| | ||  | | ||  || |||    |||  |  |  || | || |  |||  |    ||| |||    ||  |      |   || |  | |     || ||  ||   ||  |  ||| | | | | |  |   | | ||       
TCCAAGTGACAAACTTCTCCTAGTAAAAGCACTGAAAAAGAAAGGCAATGTTGTTGCTGTTACTGGAGATGGAACGAATGATGCTCCTGCATTGCATGAGgtaca-tacataattgggaattttgttttgaacaaataaaaggataaacataatggt---tttatttcaatcagatgaag-acaatcgatcatgcatgttgatgcacatttctaatt--ttgatctcttattcctcctaatttag------

upper sequence: AT5G57110.1 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: GRMZM5G893864_T01 (Zea mays), 5'ss of exon 4
TCCCAATGACAAACTTCTGCTGGTACAATCTCTGAGACGACAAGGGCATGTTGTTGCTGTCACCGGGGATGGGACAAATGATGCTCCTGCATTGCACGAGgtatagtaatttactgaaatttaaactgataatgtcgaaagctacatctaactgaaagtt-tcttttggccaagtattttgc----ctacgtttttactcagcgagcggatcattatctcattggtgttaa-attttttgagtgtatttgcag
||| |||||||||||||| || ||| || |||| |    |  ||| |||||||| ||||| || || ||||| || |||||||||||||||||||| |||||| | | | ||   | | || | | |   ||||   | |   |  || |  || | ||  |  | ||    | ||||| |     |  |  || ||    |     |  || |   ||  |   | |||  ||| ||      |||  |   
TCCTAATGACAAACTTCTCCTAGTAAAAGCTCTTAAGAAAATAGGCCATGTTGTAGCTGTTACTGGTGATGGAACGAATGATGCTCCTGCATTGCATGAGgtacattcaatt-tgggagttcatattttaaatgaatacaagaat-tcaacatgcatgtgattatatgaagcactatttggtaatacagcacttctaacatgttgaggtttcttccccttctcaatcttatcattattcccacttatcag---

upper sequence: AT5G57110.1 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: GLYMA13G00420.1 (Glycine max), 5'ss of exon 25
TCCCAATGACAAACTTCTGCTGGTACAATCTCTGAGACGACAAGGGCATGTTGTTGCTGTCACCGGGGATGGGACAAATGATGCTCCTGCATTGCACGAGgtatagtaatttactgaaatttaaactgataatgtcgaa-agctacatctaactgaaagtttcttttggccaagtattttgcctacgtttttactcagcgagcggatcattatctcattggtgttaaattttttgagtgtatttgcag
||| |||||||| ||| |||| || ||| |  ||||  |  | ||||||||||| ||||| || || ||||| |||||||||||||||||| |||| ||||| | | ||      |  ||||   || ||  | | |   |  | | | ||  |     ||  |||| |  |  | ||  |   | |    || | |         | || ||   ||||                            
TCCTAATGACAAGCTTTTGCTTGTGCAAGCATTGAGGAGGAAGGGGCATGTTGTGGCTGTAACTGGAGATGGAACAAATGATGCTCCTGCACTGCATGAGgttt-gcaa------ggcattt---cttatgtttttgggcatgtgcttttattt-----ttcattttagatacatgttaagatgatgacagtaatta-----taattaatgatacaattg----------------------------

upper sequence: AT5G57110.1 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: GLYMA15G18180.1 (Glycine max), 5'ss of exon 24
TCCCAATGACAAACTTCTGCTGGTACAATCTCTGAGACGACAAGGGCATGTTGTTGCTGTCACCGGGGATGGGACAAATGATGCTCCTGCATTGCACGAGgtatagtaatttac-tgaaatttaaactgataatgtcgaaagctacatctaactgaaagtttcttttggccaagtattttgcctacgtttttactcagcgagcggatcattatctcattggtgttaaattttttgagtgtatttgcag
|||||||||||||||  |||| |||||| |  ||||  |  | || |||||||| ||||| || |||||||| |||||||||||||||||| | || ||||| |    || ||  ||| |||| |         | |    |||     |   || |||| ||  ||   |||      ||   || ||  |  | |  ||||   |  ||   | |                               
TCCCAATGACAAACTATTGCTAGTACAAGCATTGAGGAGGAAGGGTCATGTTGTGGCTGTAACTGGGGATGGAACAAATGATGCTCCTGCACTTCATGAGgtttgcatatatatatgatatttga---------ggcttgtgcttttattgtttgtaagtatccatta--caa------tgatgacattgatggtaatggagcatttagtttgatta-------------------------------

upper sequence: AT5G57110.1 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: GLYMA09G06890.1 (Glycine max), 5'ss of exon 24
TCCCAATGACAAACTTCTGCTGGTACAATCTCTGAGACGACAAGGGCATGTTGTTGCTGTCACCGGGGATGGGACAAATGATGCTCCTGCATTGCACGAGgtatagtaatttactgaaatttaaactgataatgtcgaaagctacatctaactgaaagtttcttttggccaagtattttgcctacgtttttactcagcgagcggatcattatctcattggtgttaaattttttgagtgtatttgcag
|||||||||||||||  || | |||||| |  ||||  |  | || |||||||| ||||| || |||||||| |||||||||||||||||| | || ||||| |       || |    |||| | |         ||    |     |   ||   |||| ||       | ||   ||   || ||  |  | |  ||||   |  ||   |                                 
TCCCAATGACAAACTATTGTTAGTACAAGCATTGAGGAGGAAGGGTCATGTTGTGGCTGTAACTGGGGATGGAACAAATGATGCTCCTGCACTTCATGAGgtttg----catagtattttttatatt--------tgaggcttgtgcttgtgtg---gtttgttagtattcattacgatgatgacattgatggtaatggagcatttagtttgatt--------------------------------

upper sequence: AT5G57110.1 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: Vv11s0052g00320.t01 (Vitis vinifera), 5'ss of exon 27
TCCCAATGACAAACTTCTGCTGGTACAATCTCTGAGACGACAAGGGCATGTTGTTGCTGTCACCGGGGATGGGACAAATGATGCTCCTGCATTGCACGAGgtatagtaatttactgaaatttaaactgataatgtcgaaagct-acatctaactgaaagtttcttttggccaagtattttgcctacgtttttactcagcgagcggatcattatctcattggtgttaaattttttgagtgtatttgcag
||| |||||||| ||||| || || ||| |  ||| |    ||||||||||||||||||| || || ||||| || ||||||||||||||| | |||||||| | |  |  |   ||    || | |||||    |||  |   | ||||   ||||  |||   |  | ||  || ||    ||| |    |||  |  | |  ||                                         
TCCAAATGACAAGCTTCTTCTTGTGCAAGCATTGAAAAAGAAAGGGCATGTTGTTGCTGTAACTGGAGATGGAACTAATGATGCTCCTGCACTACACGAGgtttggcgagctctaga----tagaatgatag-accgatggtagaaatctgtttgaatctttggataagtcacatacttcaattacttggccact--gttaacctat-----------------------------------------

upper sequence: AT5G57110.1 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: EFJ15121 (Selaginella moellendorffii), 5'ss of exon 20
TCCCAATGACAAACTTCTGCTGGTACAATCTCTGAGACGACAAGGGCATGTTGTTGCTGTCACCGGGGATGGGACAAATGATGCTCCTGCATTGCACGAGgtat-agtaatttactgaaatttaaactgataatgtcgaaagctacatctaactgaaagtttcttttggccaagtattttgcctacgtttttactcagcgagcggatcattatctcattggtgttaaattttttgagtgtatttgcag
|||    || || ||||| |||||  || |  | |     |      |  | ||||||||||| || ||||| ||||| |||||||||||||||| |||||| | || ||| |  |      |    || |  ||| |     |   | |     |                                                                                            
TCCATCCGATAAGCTTCTCCTGGTCAAAACCTTAAAGTCTCTCAATGAAATCGTTGCTGTCACGGGCGATGGCACAAACGATGCTCCTGCATTGCGCGAGgtttgagaaatatgatacttcctttcatgctcgtgttgctgatt-tgtttgttctag-------------------------------------------------------------------------------------------

upper sequence: AT5G57110.1 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: EFJ22392 (Selaginella moellendorffii), 5'ss of exon 21
TCCCAATG-ACAAACTTCTGCTGGTACAATCTCTGAGACGACAAGGGC-ATGTTGTTGCTGTCACCGGGGATGGGACAAATGATGCTCCTGCATTGCACGAGgtatagtaatttactgaaatttaaactgataatgtcgaaagctacatctaactgaaagtttcttttggccaagtattttgcctacgtttttactcagcgagcggatcattatctcattggtgttaaattttttgagtgtatttgcag
  |||||| | || || || || ||  || | ||  | |  || |  | | |||||||| ||||| || || ||||||||||| ||||| || |||||||||||       |||   |  | | |   |  |    |           ||| |    ||  |  | |  |                                                                               
-ACCAATGGATAAGCTGCTACTTGTGAAAACCCTTCG-CAGCATGAACGACGTTGTTGCAGTCACAGGAGACGGGACAAATGACGCTCCAGCGTTGCACGAGgtg----ggtttggcggtaatcatcgtagtcgcattt---------tctgatgataaactgttatcag-------------------------------------------------------------------------------

upper sequence: AT5G57110.1 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: EFJ25508 (Selaginella moellendorffii), 5'ss of exon 22
TCCCAATG-ACAAACTTCTGCTGGTACAATCTCTGAGACGACAAGGGC-ATGTTGTTGCTGTCACCGGGGATGGGACAAATGATGCTCCTGCATTGCACGAGgtatagtaatttactgaaatttaaactgataatgtcgaaagctacatctaactgaaagtttcttttggccaagtattttgcctacgtttttactcagcgagcggatcattatctcattggtgttaaattttttgagtgtatttgcag
  |||||| | || || || || ||  || | ||  | |  || |  | | |||||||| ||||| || || ||||||||||| ||||| || |||||||||||       |||   |          | || ||     | ||    ||| |    ||  |  | |  |                                                                               
-ACCAATGGATAAGCTGCTACTTGTGAAAACCCTTCG-CAGCATGAACGACGTTGTTGCAGTCACAGGAGACGGGACAAATGACGCTCCAGCGTTGCACGAGgtg----ggtttggcgg---------taatcatcgtagacgcattttctgatgataaactgttatcag-------------------------------------------------------------------------------

upper sequence: AT5G57110.1 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: EFJ08462 (Selaginella moellendorffii), 5'ss of exon 22
TCCCAATGACAAACTTCTGCTGGTACAATCTCTGAGACGACAAGGGCATGTTGTTGCTGTCACCGGGGATGGGACAAATGATGCTCCTGCATTGCACGAGgtat-agtaatttactgaaatttaaactgataatgtcgaaagctacatctaactgaaagtttcttttggccaagtattttgcctacgtttttactcagcgagcggatcattatctcattggtgttaaattttttgagtgtatttgcag
|||   ||| || ||||| |||||  || |  | |     |      |  | ||||||||||| || ||||| ||||| |||||||||||||||| |||||| | || ||| |  |      |    || |  ||| |     |   | |     |                                                                                            
TCCATCTGATAAGCTTCTTCTGGTCAAAACCTTAAAGTCTCTCAATGAAATCGTTGCTGTCACGGGCGATGGCACAAACGATGCTCCTGCATTGCGCGAGgtttgagaaatatgatacttcctttcatgctcgtgttgctgatt-tgtttgttctag-------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86081055|gb|DR376812.1|DR376812
EST:     TTGTTGCTGTCACCGGGGATGGGACAAATGATGCTCCTGCATTGCACGAG                         GCAGATATTGGTCTTGCTATGGGAATAGCAGGAACAGAAGTGGCTAAGGAG
genomic: TTGTTGCTGTCACCGGGGATGGGACAAATGATGCTCCTGCATTGCACGAGgtatagtaat ... gtatttgcagGCAGATATTGGTCTTGCTATGGGAATAGCAGGAACAGAAGTGGCTAAGGAG