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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTACCTTCATATTGAAACTGGACACTGCAACCTTTATGCATCTCGTAGGTTCCCTTGAATCTGGACTCAAGGGGTTGGACACAAGTATTTCATCACAGgtgagaattgtgacaaaactgttaagacacatcaatttatcaagaaattcttaaagctttaagctgcaaaagatattcctcgaaatgcaactttctgaagcattgatatctattatcctttcag

Basic information

species Arabidopsis thaliana
transcript AT5G06120.1
intron # 26
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G06120.1 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: GLYMA06G00520.1 (Glycine max), 5'ss of exon 18
TATTACCTTCATATTGAAACTGGACACTGCAACCTTTATGCATCTCGTAGGTTCCCTTGAATCTGGACTCAAGGGGTTGGACACAAGTATTTCATCACAGgtgagaattgtgacaaaact-gttaagacacatcaatttatcaagaaattcttaaagcttta-agc--tgcaaaagatattcctcgaaatgcaactttctgaagcattgatatctattatcctttcag-------------------------------
 || || ||  |||| ||  |||||||    |||||||||||| | || || ||||||||||||||||| || |||||||| |||||||| ||||||||||| |   |||| | ||| ||  ||   |     |  |||    |  || |   |    |  | |||  |    | || ||||  |   ||| || | |   |    ||| | ||| ||| ||| |                                  
CATCACTTTTGTATTAAACTTGGACACAAACACCTTTATGCATATGGTTGGCTCCCTTGAATCTGGACTTAAAGGGTTGGATACAAGTATCTCATCACAGgtta---ttgtaataaatctcatttctatcttcctgttttcagactaaatgacatttttccatagcattttttaggagattctgcttgatgtaaatattcaagtatttggtttcttttaacctatgcttttgtccaactcttcaaatttctgattacag

upper sequence: AT5G06120.1 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: GLYMA04G00430.1 (Glycine max), 5'ss of exon 24
TATTACCTTCATATTGAAACTGGACACTGCAACCTTTATGCATCTCGTAGGTTCCCTTGAATCTGGACTCAAGGGGTTGGACACAAGTATTTCATCACAGgtgagaattgtgacaaaactgttaagacacatcaatttatcaagaaattcttaaagctttaagctgcaa-----aagatattcctcgaaatgcaactttctgaagcattgatatct----attatcctttcag--------------------------
 || || ||  |||| ||  |||||||    |||||||||||| | || || ||||||||||||||||| || |||||||| |||||||| ||||| ||||| |   |||| ||||| ||  |      | ||   || |||    |   |||||  |||     |||      | || ||||  |   ||| || | | |      ||| | |||    | ||| | ||                             
CATCACTTTTGTATTAAACTTGGACACAAACACCTTTATGCATATGGTTGGCTCCCTTGAATCTGGACTTAAAGGGTTGGATACAAGTATCTCATCGCAGgtta---ttgtaacaaatctcatttccgtcttcctgttttcagactaaa-ttaaatttttccatagcattttttaggagattctgcttgatgtaaatatttatgtatttggtttcttgtaactatgcctttgtccaagtcttctaatttctgattacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124845704|gb|EH930141.1|EH930141
EST:     TGGACACAAGTATTTCATCACAG                         TGTGCAATAGCTGTCGACAATCTTGCTTCATATTATTTCAATAACATCACA
genomic: TGGACACAAGTATTTCATCACAGgtgagaattg ... atcctttcagTGTGCAATAGCTGTCGACAATCTTGCTTCATATTATTTCAATAACATCACA