Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   		30  
 5'  3'   		31  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATTCATACAATTCCAGCTTACTGTGAATGTTGCCGCACTTATAATCAATGTTGTAGCAGCAATGTCTTCTGGTGACGTCCCTCTAAAGGCTGTACAGgttagtaccttgatgcttatttgaatggttgaacttttaagacaaggataaaagatataatggtgttctttgatgcag

Basic information

species Arabidopsis thaliana
transcript AT3G21180.1
intron # 26
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G21180.1 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: LOC_Os02g08010.1 (Oryza sativa), 5'ss of exon 10
GAAATTCATACAATTCCAGCTTACTGTGAATGTTGCCGCACTTATAATCAATGTTGTAGCAGCAATGTCTTCTGGTGACGTCCCTCTAAAGGCTGTACAGgttagtaccttgatgcttatttgaatggttgaacttttaagacaaggata-----aaagatataatggtgttctttgatgcag--------------------
 || || || ||||||||||||||||| |||||||| || |||||||||||||| || || || || ||||| ||  | || |||||||| || || |||||| | | |   |   |  | | |    ||     ||| |||  |  |||     | || ||      ||| || ||    |                     
AAAGTTTATTCAATTCCAGCTTACTGTAAATGTTGCGGCTCTTATAATCAATGTGGTTGCTGCTATTTCTTCAGGAAATGTTCCTCTAAACGCCGTTCAGgtttgcaacaacacaatgctcttagaattt---tctttgagaggaaaatactcttagagttactgctatgtactatgccatattagtataactttgtttattg

upper sequence: AT3G21180.1 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: GLYMA13G44990.1 (Glycine max), 5'ss of exon 28
GAAATTCATACAATTCCAGCTTACTGTGAATGTTGCCGCACTTATAATCAATGTTGTAGCAGCAATGTCTTCTGGTGACGTCCCTCTAAAGGCTGTACAGgt-tagtaccttgatgcttatttgaatggttgaacttttaagacaaggataaaagatataatggtgttctttg-atgcag--------------------
|||||| || || ||||| || ||||| |||||||| || ||| |||| ||||| || |||||||| ||||||||||| || ||| |||| |||||||||||    | || |      |  |||||||  |  |   || | |  |     | ||  | | |     |   ||  |  |                     
GAAATTTATTCAGTTCCAACTCACTGTTAATGTTGCTGCTCTTGTAATAAATGTAGTGGCAGCAATATCTTCTGGTGATGTTCCTTTAAATGCTGTACAGgtaccctgccctctaatattgttgaatgaatatatgattcaaattacagatagagtcacatttacaatacctgcgtttacccctctcttactgtgtatag

upper sequence: AT3G21180.1 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: GLYMA15G00340.1 (Glycine max), 5'ss of exon 28
GAAATTCATACAATTCCAGCTTACTGTGAATGTTGCCGCACTTATAATCAATGTTGTAGCAGCAATGTCTTCTGGTGACGTCCCTCTAAAGGCTGTACAGgt---tagtaccttgatgct-tatt--tgaatggt------tgaacttttaagacaaggataaaagatataatggtgttctttgatgcag------
|||||| || || |||||||| ||||| ||||| || || ||| |||| |||||||| || ||||| ||||||||||| || ||| |||| |||||||||||     | |   | ||  | ||||  ||||| ||      |    ||  || |  | ||||| ||  | | |     | || |||          
GAAATTTATTCAGTTCCAGCTCACTGTTAATGTAGCTGCTCTTGTAATAAATGTTGTGGCCGCAATATCTTCTGGTGATGTTCCTTTAAATGCTGTACAGgtaccctgcattgtcatcttctattgttgaatagtatatgatatgattcaaataacaagataagagtcacatttacaatattcgatttgtgtatag

upper sequence: AT3G21180.1 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: GLYMA08G23760.1 (Glycine max), 5'ss of exon 29
GAAATTCATACAATTCCAGCTTACTGTGAATGTTGCCGCACTTATAATCAATGTTGTAGCAGCAATGTCTTCTGGTGACGTCCCTCTAAAGGCTGTACAGgttagtaccttgatgcttatttgaatggttgaacttttaagacaaggataaaagatataatggtgttc---tttgatgcag-------------------
|||||| || || ||||||||||| || |||||||| || ||| |||| |||||||| ||||||||  |||||||||| || ||| |||| || || |||||  |||  |       |||||    |      |||  |    || || |    ||| |  ||        |   |  |||                   
GAAATTTATCCAGTTCCAGCTTACAGTTAATGTTGCTGCTCTTGTAATAAATGTTGTGGCAGCAATAACTTCTGGTGATGTTCCTTTAAATGCAGTGCAGgtacgtatatcctcctctattttttagtcacgccttacactctaatgagacctaatagagcggaaagagggtgaaaaacaggcaatcttattagatttgg