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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCTGAATGAGATATATGCAGAAGAAGAAGACTATGACAGGTTGCGCGAGTCTATTGATTTGCATGACAGTTTTGACCAGATAGGTCTCGCTCAGAAGgtaagagtttaaatctatctatcgagtacacatttatatttccccttaaatactaatttatcgttatgggatggtgcgaaatag

Basic information

species Arabidopsis thaliana
transcript AT3G11130.1
intron # 26
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 25
AGCTCTGAATGAGATATATGCAGAAGAAGAAGACTATGACAGGTTGCGCGAGTCTATTGATTTGCATGACAGTTTTGACCAGATAGGTCTCGCTCAGAAGgtaagagtttaaatctatctatcgagtacac-atttatatttcccctta---aatactaatttatcgttatgggatggtgcgaaatag
||| |||||||| |||||||  || || ||||||||||| || ||||||||||| |||||||||||||| |  |||||||| ||||| || || |||||||| ||    |  || |||   ||  ||  || |||| |   | |  |||    | || | |  ||  ||||    |||   | |    
AGCCCTGAATGAAATATATGTTGAGGAGGAAGACTATGATAGATTGCGCGAGTCAATTGATTTGCATGATAACTTTGACCAAATAGGCCTTGCACAGAAGgttag---ctgcatttattcttcatgttgactatttttcagttcaattataggaaaccagtggattattattatttggaatgcag---

upper sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: GLYMA14G06340.1 (Glycine max), 5'ss of exon 26
AGCTCTGAATGAGATATATGCAGAAGAAGAAGACTATGACAGGTTGCGCGAGTCTATTGATTTGCATGACAGTTTTGACCAGATAGGTCTCGCTCAGAAGgtaagagtttaaatctatctatcgagtacacatttatatttcccct---taaatactaatttatcgttatgggatggtgcgaaatag
|||  |||||||||||||||  || || ||||| ||||| || ||||||||||| ||||||||||| || |  ||||| || ||||| || ||||| |||||  |    |    || |  || |     |  |||   ||||  ||    ||||   |  |||| |||||       | || |    
AGCGTTGAATGAGATATATGTCGAGGAGGAAGATTATGATAGATTGCGCGAGTCAATTGATTTGCACGATAACTTTGATCAAATAGGCCTTGCTCAAAAGgtgtggaaatttg-ctcttaattggaactattttttggtttcagctgtggaaatctcagattattgttattactgtatacgcag---

upper sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 26
AGCTCTGAATGAGATATATGCAGAAGAAGAAGACTATGACAGGTTGCGCGAGTCTATTGATTTGCATGACAGTTTTGACCAGATAGGTCTCGCTCAGAAGgta-agagtttaaatctatctatcgagtacacatttatatttcccctt-aaatactaatttatcgttatgggatggtgcgaaatag
|||  |||||||||||||||  || || ||||| ||||| || ||||||||||| ||||||||||| || |  ||||| || ||||| || || || |||||   ||  ||   |||   |    | ||    ||| | ||     |  ||||   |  ||||   |||   |  ||  ||   ||
AGCGTTGAATGAGATATATGTTGAGGAGGAAGATTATGATAGATTGCGCGAGTCAATTGATTTGCACGATAACTTTGATCAAATAGGCCTTGCCCAAAAGgtgtggaaatttgctcttaattggaactatttttttgttttagttgtggaaatctcagattattactatt--actgtatgatgcag

upper sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 25
AGCTCTGAATGAGATATATGCAGAAGAAGAAGACTATGACAGGTTGCGCGAGTCTATTGATTTGCATGACAGTTTTGACCAGATAGGTCTCGCTCAGAAGgtaag--agtttaaatctatctatcgagtacacatttat-atttccccttaaatactaatttatcgttatgggatggtgcgaaatag
||| || ||||| |||||||  || || ||||||||||| || ||||||||||| ||||||||||| || |  || ||||| ||||| || || ||||||||  |     || | |||   | | || ||    |   | | ||      ||    ||  ||||  ||||    |||   | |    
AGCCCTTAATGAAATATATGTTGAGGAGGAAGACTATGATAGATTGCGCGAGTCGATTGATTTGCACGATAACTTCGACCAAATAGGCCTAGCACAGAAGgttggctgcattcattcttcatgttgactatttttcagttaattataggaaaccgatagattattattattatctggaatgcag---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116461287|gb|EG503879.1|EG503879
EST:     AGTCTATTGATTTGCATGACAGTTTTGACCAGATAGGTCTCGCTCAGAAG                         ATTGAGAAACACGAGCTTGTTGAAATGAGACGTGTGGCTGCTTATATCTAT
genomic: AGTCTATTGATTTGCATGACAGTTTTGACCAGATAGGTCTCGCTCAGAAGgtaagagttt ... tgcgaaatagATTGAGAAACACGAGCTTGTTGAAATGAGACGTGTGGCTGCTTATATCTAT