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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGCAGCTTTTGAGTGTGTGTTTACTCTGGTGGACAGCTGCCTTGATCAAGTTAATCCGTCTTCTTTCATTGTTCCTTTCCTCAAATCCGGATTAGAAGgcgagtgttttggtcttcctctgatgataattaatctactgtttagccattttcttttattagcttataacataatctttgtttatgcag

Basic information

species Arabidopsis thaliana
transcript AT2G02560.2
intron # 26
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G02560.2 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: GRMZM2G168629_T04 (Zea mays), 5'ss of exon 26
AAAGCAGCTTTTGAGTGTGTGTTTACTCTGGTGGACAGCTGCCTTGATCAAGTTAATCCGTCTTCTTTCATTGTTCCTTTCCTCAAATCCGGATTAGAAGgcgagtgtt-ttggtcttcctctgatga---taattaatc--tactgtttagccattttcttttattagct--tataacataatctttgtttatgcag--
||||| || ||||| ||||||  |||| |  ||||||| || ||||||||||| ||||| || || |||||||| |||||||||   || || ||||  ||  |||    ||  |   | | |||| |    ||  | |   ||  ||   |  |  ||| |   ||| |   | | | |  |||| |  | ||  ||  
AAAGCTGCCTTTGAATGTGTGGATACTTTATTGGACAGTTGTCTTGATCAAGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTGgtaagtacggtttcttcacttgtgatcaagtcaaccatttggtatagtcctggaaaattcatgacttatcaaatgtgataccatctgtagtcatttagag

upper sequence: AT2G02560.2 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: Vv12s0035g01840.t01 (Vitis vinifera), 5'ss of exon 27
AAAGCAGCTTTTGAGTGTGTGTTTACTCTGGTGGACAGCTGCCTTGATCAAGTTAATCCGTCTTCTTTCATTGTTCCTTTCCTCAAATCCGGATTAGAAGgcgagtgttt-tggtcttcctctgatgataattaatctactgtttagc--cattttcttttattagc--ttataacataatctttgttta--tgcag--------------------------------------------------------------------------------------
|||||||||||||| |||||    || ||| | ||||| || ||||||||||| ||||| || |||||||||||||| |  ||||||||||| || || || | || ||| |  | ||  | | |  |  |  |   | || |||  |  || ||| |||| ||  |  || |  |   |  || |||||  | ||                                                                                       
AAAGCAGCTTTTGAATGTGTAGACACACTGCTAGACAGTTGTCTTGATCAAGTGAATCCTTCATCTTTCATTGTTCCCTATCTCAAATCCGGTTTGGATGgtgcgtttttatttttttatttttaacaagaccatcattcttttttacttcactttatttttttcacccttttccccccactttagtttagtttcatttcagctgctaaaagttatttcatgtttctatacttgaagtttagtttatcacttcctgaactgaaattgatttggctcttctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116401655|gb|EG444247.1|EG444247
EST:     AGTTAATCCGTCTTCTTTCATTGTTCCTTTCCTCAAATCCGGATTAGAAG                         ATCATTATGACCTGAAGATGCTTTGTCATCTTATACTCTCCTTACTAGCAG
genomic: AGTTAATCCGTCTTCTTTCATTGTTCCTTTCCTCAAATCCGGATTAGAAGgcgagtgttt ... gtttatgcagATCATTATGACCTGAAGATGCTTTGTCATCTTATACTCTCCTTACTAGCAG
EST: gi|116401710|gb|EG444302.1|EG444302
EST:     AGTTAATCCGTCTTCTTTCATTGTTCCTTTCCTCAAATCCGGATTAGAAG                         ATCATTATGACCTGAAGATGCTTTGTCATCTTATACTCTCCTTACTAGCAG
genomic: AGTTAATCCGTCTTCTTTCATTGTTCCTTTCCTCAAATCCGGATTAGAAGgcgagtgttt ... gtttatgcagATCATTATGACCTGAAGATGCTTTGTCATCTTATACTCTCCTTACTAGCAG
EST: gi|116378952|gb|EG421544.1|EG421544
EST:     AGTTAATCCGTCTTCTTTCATTGTTCCTTTCCTCAAATCCGGATTAGAAG                         ATCATTATGACCTGAAGATGCTTTGTCATCTTATACTCTCCTTACTAGCAG
genomic: AGTTAATCCGTCTTCTTTCATTGTTCCTTTCCTCAAATCCGGATTAGAAGgcgagtgttt ... gtttatgcagATCATTATGACCTGAAGATGCTTTGTCATCTTATACTCTCCTTACTAGCAG
EST: gi|164056912|gb|ES200576.1|ES200576
EST:     TCTTCTTTCATTGTTCCTTTCCTCAAATCCGGATTAGAAG                         ATCAATTATGACCTGAAGATGCTTTGTCATC
genomic: TCTTCTTTCATTGTTCCTTTCCTCAAATCCGGATTAGAAGgcgagtgttt ... gtttatgcagATCA-TTATGACCTGAAGATGCTTTGTCATC
EST: gi|164230384|gb|ES129701.1|ES129701
EST:     AGTTAATCCGTCTTCTTTCATTGTTCCTTTCCTCAAATCCGGATTAGAAG                         ATCATTATGACCTGAAGATGCTTTGTCATCT
genomic: AGTTAATCCGTCTTCTTTCATTGTTCCTTTCCTCAAATCCGGATTAGAAGgcgagtgttt ... gtttatgcagATCATTATGACCTGAAGATGCTTTGTCATCT
EST: gi|164198060|gb|ES093099.1|ES093099
EST:     AGTTAATCCGTCTTCTTTCATTGTTCCTTTCCTCAAATCCGGATTAGAAG                         ATCATTATGACCTGAAGATGCTTTGTCATCT
genomic: AGTTAATCCGTCTTCTTTCATTGTTCCTTTCCTCAAATCCGGATTAGAAGgcgagtgttt ... gtttatgcagATCATTATGACCTGAAGATGCTTTGTCATCT
EST: gi|116401709|gb|EG444301.1|EG444301
EST:     AGTTAATCCGTCTTCTTTCATTGTTCCTTTCCTCAAATCCGGATTAGAAG                         ATCATTATGACCTGAAGATGCTTTGTCATCTTATACTCTCCTTACTAGCAG
genomic: AGTTAATCCGTCTTCTTTCATTGTTCCTTTCCTCAAATCCGGATTAGAAGgcgagtgttt ... gtttatgcagATCATTATGACCTGAAGATGCTTTGTCATCTTATACTCTCCTTACTAGCAG