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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGCCTAAGGCATTTTTCGCAAATATGCCATTGTCTAAGACACTTACCATGAATCTTGACGTTCCAGAGCCATGGCTGGTTGAACCAGTAATTGCCATgtatgtattttcccctgaaaaagaaaatgggattatgctgttctttttggctcaaatttgtcatggcatttgcttgtttagttcacttatttttgcttatgcctgaccttctgcttttttgtttcctctctgctggatgtctttgtccag

Basic information

species Arabidopsis thaliana
transcript AT1G71220.1
intron # 26
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G71220.2 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: LOC_Os02g44510.1 (Oryza sativa), 5'ss of exon 6
ATGGGCCTAAGGCATTTTTCGCAAATATGCCATTGTCTAAGACACTTACCATGAATCTTGACGTTCCAGAGCCATGGCTGGTTGAACCAGTAATTGCCATgtatgtattttcccctgaaaaagaaaatgggat-tatgctgttctttttggctcaaatttgtcatggcatttgcttgtttagttcacttatttttgcttatgcctgaccttctgcttttttgtttcctctctgctggatgtctttgtccag
|||| ||||| || || ||||||||||||||| | || || |||||||| |||||  |||| || || || |||||||| |||||||| || |||||||||||||   |  ||  | || | |||      || |    || | ||||| |   |   |  |||     |||||||||||  ||   | |                                                             
ATGGACCTAAAGCTTTCTTCGCAAATATGCCACTATCGAAAACACTTACGATGAACATTGATGTCCCTGAACCATGGCTTGTTGAACCTGTCATTGCCATgtatgc--tacccattaaatatgaagtaaatatctgaaatgctatttttagtgtagcatcatcaccttctttgcttgtttttttgtgtcag------------------------------------------------------------

upper sequence: AT1G71220.2 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: GLYMA08G20020.1 (Glycine max), 5'ss of exon 26
ATGGGCCTAAGGCATTTTTCGCAAATATGCCATTGTCTAAGACACTTACCATGAATCTTGACGTTCCAGAGCCATGGCTGGTTGAACCAGTAATTGCCATgtatgtattttcccctgaaaaagaaaatgggattatgctgttctttttggctcaaatttgtcatggcatttgcttgtttagttcacttatttttgcttatgcctgaccttctgcttttttgtttcctctctgctggatgtctttgtccag
| || || |||||||||||||| || ||||||||||||||||| || |||||||||||||| ||||| || || ||||| ||||| || || |||||  |||||||||| |||  | | |        |  || |  |  |||      ||    | ||  ||    |     ||  || |||||      |   || |                                                   
ACGGCCCAAAGGCATTTTTCGCTAACATGCCATTGTCTAAGACTCTCACCATGAATCTTGATGTTCCCGAACCTTGGCTTGTTGAGCCTGTTATTGCTGTgtatgtattatcct-taacattttgttggctataaaaccattcaca--agcctccacttaacagctaaagattttagttggttcaaactggtaccctaaaaga-----------------------------------------------

upper sequence: AT1G71220.2 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: GLYMA05G30230.1 (Glycine max), 5'ss of exon 27
ATGGGCCTAAGGCATTTTTCGCAAATATGCCATTGTCTAAGACACTTACCATGAATCTTGACGTTCCAGAGCCATGGCTGGTTGAACCAGTAATTGCCATgtatgtattttcccctgaaaaagaaaatgggattatgctgttctttttggctcaaatttgtcatggcatttgcttgtttagttcacttatttttgcttatgcctgaccttctgcttttttgtttcctctctgctggatgtctttgtccag
|||| ||  | ||| | || ||||| |||||| |||||||||| || |||||||||||||| ||||| ||| | ||||| ||||| || || |||||  |||||||||| |          ||||  ||  | | | ||| | |||||   |||| ||| |  | | || |   ||   |        ||| |||   ||   | ||  |                                        
ATGGCCCACAAGCACTCTTTGCAAACATGCCACTGTCTAAGACTCTCACCATGAATCTTGATGTTCCTGAGTCTTGGCTTGTTGAGCCCGTTATTGCATTgtatgtattatttt-------agaatttgttaatttactgatattttta--tcaattttttgtttgaatgtaactggagaaga-gtaaattattgagaataaattacact----------------------------------------

upper sequence: AT1G71220.2 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: GLYMA08G13400.1 (Glycine max), 5'ss of exon 29
ATGGGCCTAAGGCATTTTTCGCAAATATGCCATTGTCTAAGACACTTACCATGAATCTTGACGTTCCAGAGCCATGGCTGGTTGAACCAGTAATTGCCATgtatgtattttcccctgaaaaagaaaatgggattatgctgttctttttggctcaaatttgtcatggcatttgcttgtttagttcacttatttttgcttatgcctgaccttctgcttttttgtttcctctctgctggatgtctttgtccag
|||| || || ||||| || ||||| ||||| ||||||||||| || |||||||||||||| ||||| ||| | ||||| ||||| || || |||||  |||||||| | |          ||    ||  | ||| ||| |  ||||  |     |||||  ||  |||   |  | ||  |     |   |   | || |   |                                            
ATGGTCCAAAAGCATTCTTTGCAAACATGCCGTTGTCTAAGACTCTCACCATGAATCTTGATGTTCCTGAGTCTTGGCTTGTTGAGCCTGTTATTGCATTgtatgtaatatttt-------aggctttgttaatatactgattcttttatcatttttttgtt-tgctattctttaatgtaactggagaagagtaaatgattcagaata------------------------------------------

upper sequence: AT1G71220.2 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: Vv12s0034g02230.t01 (Vitis vinifera), 5'ss of exon 27
ATGGGCCTAAGGCATTTTTCGCAAATATGCCATTGTCTAAGACACTTACCATGAATCTTGACGTTCCAGAGCCATGGCTGGTTGAACCAGTAATTGCCATgtatgtattttcccctgaaaaagaaaatgggattatgctgttctttttggctcaaatttgtcatggcatttgcttgtttagttcacttatttttgcttatgcctgaccttctgcttttttgtttcctctctgctggatgtctttgtccag
|||| ||||| |||||||| || ||||||||||| || || || || || |||||||| || || || ||||||||||| ||||| || || |||||  ||||||| | ||||  |         |   | |||  | |||   ||||   |  ||| |||    ||||   ||| ||    | ||||      | |||    ||| ||| |  |  | || |     |||    |              
ATGGCCCTAAAGCATTTTTTGCCAATATGCCATTATCCAAAACCCTCACTATGAATCTCGATGTGCCTGAGCCATGGCTTGTTGAGCCTGTTATTGCTGTgtatgtttcttccattacctgttgtataagaatt--gatgtcagtttt---ttgaatctgtgtgtgcat---cttattagactaactt------gtttacatttgatcttttcttggtctggtctggttctttcag--------------

upper sequence: AT1G71220.2 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: PP1S25_65V6.1 (Physcomitrella patens), 5'ss of exon 8
ATGGGCCTAAGGCATTTTTCGCAAATATGCCATTGTCTAAGACACTTACCATGAATCTTGACGTTCCAGAGCCATGGCTGGTTGAACCAGTAATTGCCATgtatgta----ttttcccctgaaaaagaaaatg-ggattatgctgttctttttggctcaaatttgtcatg-gcatttgcttgtttagttcacttatttttgcttatgcctgaccttctgcttttttgtttcctctctgctggatgtctttgtccag
  || ||  | ||  ||||  | || ||||||   ||    || ||||| |||||||| ||||||||||| |||||||| || ||||| || |||||  |||| |       ||||     |  |||||||||  | ||||  || |   ||    | | |||     |  | | || || | |||  | |       |                                                         
CCGGACCCTATGCTCTTTTTTCCAACATGCCACCCTCCCGCACCCTTACGATGAATCTCGACGTTCCAGAACCATGGCTTGTAGAACCTGTTATTGCTGTgtaagcgaaccctttcattgcatgaagaaaatgtaggttatattgatgcattgttgtaatattctaagtaaggaatttctggattatctaaaaggaactc--------------------------------------------------------