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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTATAGTGGGTATTTAGGAGTAGAACTGAAGTGTGAGATATTTATGGGGCCTGTTTACTACCAGAGACTGCGTCACATGGTCTCAGACAAATTCCAGgtttttcgacccttctggcttcatttcttttatcatcctgacatatagtctccaactggcacttgtctcatcttcgtgctatatctgaatcataatactctggcttacag

Basic information

species Arabidopsis thaliana
transcript AT1G29940.1
intron # 26
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G29940.1 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: GRMZM2G388892_T01 (Zea mays), 5'ss of exon 26
ATTGTATAGTGGGTATTTAGGAGTAGAACTGAAGTGTGAGATATTTATGGGGCCTGTTTACTACCAGAGACTGCGTCACATGGTCTCAGACAAATTCCAGgt--ttttcgacccttctggcttcatttcttttatcatcctgacatatagtctccaactggc-acttgtctcatcttcgtgctatatctgaatcataatactctggcttacag
  | ||||||||   ||| ||    ||  || | |||||||| || || || |||||||| |||||  | || ||||| |||||||||||||||||||||||  || |      ||||   || |   ||  |   ||  |  |||  |  ||  | |   | | ||  | | |     |  |  |  ||||| |  ||              
CCTTTATAGTGGAGTTTTTGGCACTGAGATGGACTGTGAGATTTTCATCGGACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAGgtgattattttttgttctatattaaacgctacttcaatattttcatgcaccctatacccatcgagttagcccttaaatttttttaaaatgaatgaggatg-------------

upper sequence: AT1G29940.1 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: GLYMA13G26190.1 (Glycine max), 5'ss of exon 29
ATTGTATAGTGGGTATTTAGGAGTAGAACTGAAGTGTGAGATATTTATGGGGCCTGTTTACTACCAGAGACTGCGTCACATGGTCTCAGACAAATTCCAGgtttttcgacccttctggcttcatttcttttatcatcctgacatatagtctccaactggcacttgtctcatcttcgtgctatatctgaatcataatactctggcttacag
  | || |||||   ||  |||  |||||| |  |||||||||||||| || |||||||| || ||| | |||||||||||||| ||||||||||| |||||      |  |       || | ||| | ||  | | | |   |        || ||  ||||  || || ||| ||   |  |  | | | |||  | |||||  |  
TCTATACAGTGGTGTTTATGGAACAGAACTAACATGTGAGATATTTATTGGACCTGTTTATTATCAGCGGCTGCGTCACATGGTTTCAGACAAATTTCAGgtgaacaaattcactgttttttacttcctataaaaccatcagcga--------aaatgatactttccttattttc-tgtgttgacacattaaaaatgtt-tggctatcta

upper sequence: AT1G29940.1 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: GLYMA17G23500.2 (Glycine max), 5'ss of exon 3
ATTGTATAGTGGGTATTTAGGAGTAGAACTGAAGTGTGAGATATTTATGGGGCCTGTTTACTACCAGAGACTGCGTCACATGGTCTCAGACAAATTCCAGgtttttcgacccttctggcttcatttcttttatcatcctgacatatagtctccaactggcacttgtct-catcttcgtgctatatctgaatcataatactctggcttacag
  | ||||||||   ||  |||   ||||| |  |||||||||||||| || |||||||| || ||  | |||||||||||||| ||||||||||| |||||      |  |  |||  || | ||| | ||| | |   |          | || ||  |||| ||    | |||     || |  |  |    | |   ||| |   | 
TCTATATAGTGGTGTTTATGGAACGGAACTAACATGTGAGATATTTATTGGACCTGTTTATTATCAACGGCTGCGTCACATGGTTTCAGACAAATTTCAGgtgaactaattca-ctgttttgacttcctatataaccaccag---------caaaatgatacttctccatgttttctgaaaatgttaggctttctagatagtggttgtga-

upper sequence: AT1G29940.1 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: Vv13s0084g00600.t01 (Vitis vinifera), 5'ss of exon 25
ATTGTATAGTGGGTATTTAGGAGTAGAACTGAAGTGTGAGATATTTATGGGGCCTGTTTACTACCAGAGACTGCGTCACATGGTCTCAGACAAATTCCAGgtttttcgacccttctggcttcatttcttttatcatcctgacatatagtctccaactggcacttgtctcatcttcgtgctatatctgaatcataatac-tctggcttacag----------
|||||| ||||| | ||  ||   |||||| |  |||||||| ||||| || |||||||| || ||| ||||||| |||||||||||||||||||| |||||     |||  |||             ||||  ||  ||  | ||||     | || |  |||   |||||||  |  | |   | |   ||||    | |   | |  |          
ATTGTACAGTGGATTTTATGGTACAGAACTCACATGTGAGATTTTTATTGGACCTGTTTATTATCAGCGACTGCGGCACATGGTCTCAGACAAATTTCAGgt-----gacttttcgta----------tttacaattatg-taaatag-----agctagggcttacttcatctttatattttgcttaagatataaggtgtgtaattcaaggcatatgttct