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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTGCCGGTAGTGCGAGTAATGAATCAGTTGATAGACTACCGACATCAGCCACTTGTATGAATCTTCTTAAGCTTCCGCCCTATCAAAGgtttgtcctctcataacacaaactctttggttttgcttagctaagagacttgttttgttgccaaatagcttctcttggtgttgtaattggaaaaagcaaataaagcatgtcttgttgttaatgatgcag

Basic information

species Arabidopsis thaliana
transcript AT3G17205.1
intron # 25
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G17205.2 (Arabidopsis thaliana), 5'ss of exon 25
lower sequence: GLYMA07G36390.1 (Glycine max), 5'ss of exon 25
GGCTGCCGGTAGTGCGAGTAATGAATCAGTTGATAGACTACCGACATCAGCCACTTGTATGAATCTTCTTAAGCTTCCGCCCTATCAAAGgtttgtcctctcataacacaaactctttggttttgcttagc-taagagacttgttttgttgcc--aaatagcttctcttggtgttgtaattggaaaaagcaaataaagcatgtcttgttgttaatgatgcag
|||| |||||| |||   | | |||||| ||||  || |||| ||||| || |||||||||||||| || ||||||||||| |||  ||||||||||||    ||    || || |    |  |  ||    ||  ||  ||   |  ||     |||    ||  | ||         ||| |                                      
GGCTTCCGGTAATGCCGCTGAGGAATCACTTGACCGATTACCAACATCGGCTACTTGTATGAATCTACTAAAGCTTCCGCCTTATACAAGgtttgtcctaggctaggttaacctttgcaatagtatttgttgtagtagtttttgctcattcttttaaactattttccctgacaaatatgttgcag-------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125187247|gb|EL202201.1|EL202201
EST:     CGACATCTAGCCACTTGTATGAATCTTCTTAAGCTTCCGCCCTATCAAAG                         CAAAGAGCTACTTGAGACCAAATTGATGTACG
genomic: CGACATC-AGCCACTTGTATGAATCTTCTTAAGCTTCCGCCCTATCAAAGgtttgtcctc ... aatgatgcagCAAAGAGCTACTTGAGACCAAATTGATGTACG
EST: gi|116403520|gb|EG446112.1|EG446112
EST:     CCGACATCAGCCACTTGTATGAATCTTCTTAAGCTTCCGCCCTATCAAAG                         CAAAGAGCTACTTGAGACCAAATTGATGTACGCCATAAGCGCAGAAGCGGG
genomic: CCGACATCAGCCACTTGTATGAATCTTCTTAAGCTTCCGCCCTATCAAAGgtttgtcctc ... aatgatgcagCAAAGAGCTACTTGAGACCAAATTGATGTACGCCATAAGCGCAGAAGCGGG
EST: gi|125011857|gb|EL084126.1|EL084126
EST:     GACATCTAGTCCACTTGTATGAATCTTCTTAAGCTTCCGCCCTATCAAAG                         CAAAGAGCTACTTGAGACCAAATTGATGTACG
genomic: GACATC-AG-CCACTTGTATGAATCTTCTTAAGCTTCCGCCCTATCAAAGgtttgtcctc ... aatgatgcagCAAAGAGCTACTTGAGACCAAATTGATGTACG