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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGAATTATGATTGATGATTGTGATGTGGCTAAGTTCGGACTGACAGATGTACGCAGGGTTCTAAGTATCATACCACAATCTCCAGTTCTTTTCTCAGgttcgtgtgtgtatttaagacaacattgtaagtctgttcttgcattatgttgctcattgtgagaatcaatttttttttttgttag

Basic information

species Arabidopsis thaliana
transcript AT1G30410.1
intron # 25
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G30410.1 (Arabidopsis thaliana), 5'ss of exon 25
lower sequence: GLYMA06G46940.1 (Glycine max), 5'ss of exon 25
GGAAGAATTATGATTGATGATTGTGATGTGGCTAAGTTCGGACTGACAGATGTACGCAGGGTTCTAAGTATCATACCACAATCTCCAGTTCTTTTCTCAGgttcgtgtgtgtatttaagacaacattgtaagtctgttcttgcattatgttgctcattgtgagaatcaatttttttttttgttag----------------------
|||| ||| || ||||||| ||||||| |  |||  |||||| |   |||||| || |  ||||| | |||||||||||||||||||||||||||||| |||       | |       |||  ||| |   ||||| ||   ||||     |  | | ||||  | | |||  | |  |||||                       
GGAAAAATCATTATTGATGGTTGTGATATTTCTACATTCGGATTAGAAGATGTTCGAAAAGTTCTTACTATCATACCACAATCTCCAGTTCTTTTCTCTGgt------attttccatgaacagaattcttgttctgtgctaa-attagacaaccaaatatgagtttgattttaatctgctgttacgaatgtttttatattgtaattg

upper sequence: AT1G30410.1 (Arabidopsis thaliana), 5'ss of exon 25
lower sequence: Vv10s0003g04460.t01 (Vitis vinifera), 5'ss of exon 5
GGAAGAATTATGATTGATGATTGTGATGTGGCTAAGTTCGGACTGACAGATGTACGCAGGGTTCTAAGTATCATACCACAATCTCCAGTTCTTTTCTCAGgttcgtgtgtgta----tttaagacaac-attgtaagtctgttcttgcattatg--ttgctcattgtgagaatc-----aatttttttttttgttag----
||||||||  |||||||||| | |||  |  | || || ||||| |||||| | || |  ||| ||||||||||||||||||| ||| |||||||||| |||  || |    |     |||  | | | | ||  |||   |||  |||  |||  || ||| || |||  ||      ||  || ||||    ||     
GGAAGAATCTTGATTGATGAGTATGACATTTCAAAATTTGGACTTACAGATCTCCGTAAAGTTTTAAGTATCATACCACAATCACCAATTCTTTTCTCTGgtatgtatcatcaacaacttactatacctactgagagtac-ttcaagcaccatgcatttctctttctgattatttggcaaaacttcttttgaactatcaat

upper sequence: AT1G30410.1 (Arabidopsis thaliana), 5'ss of exon 25
lower sequence: Vv10s0003g04470.t01 (Vitis vinifera), 5'ss of exon 24
GGAAGAATTATGATTGATGATTGTGATGTGGCTAAGTTCGGACTGACAGATGTACGCAGGGTTCTAAGTATCATACCACAATCTCCAGTTCTTTTCTCAGgttcgtgt-------------gtgtatttaagacaacattgtaagtctgttcttgcat---tatgttgctcattgtga-gaatcaatttttttttttgttag
||||||||   ||| ||||| | |||  | || || || ||||| |||||| | || |  ||| |||| || |||||||||||||||||||||||||| |||  |  |             || |  |||  | |||  |  |    | ||   |||    |   ||||||  | ||| || | ||  | | |  || |   
GGAAGAATATGGATAGATGAGTATGACATTGCAAAATTTGGACTCACAGATCTGCGTAAAGTTTTAAGCATTATACCACAATCTCCAGTTCTTTTCTCTGgtaagcattatctgctgctaggttttcttactataactattgagcattttttaggcacaactgcattgctctatctgatgatttaacatatgtccttttc--