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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCCGAGAAGAATTCAAGTCATGCACAATGCTAATCATCGCTCATCGTCTCAATACTATCATCGACTGTGACAAAGTTCTTGTCCTTGATTCTGGAAAAgtacgtatacaaaatattcgaccactacttgcatcaatttaatcacttttgagctaacatatattgagattcccaacacctcag

Basic information

species Arabidopsis thaliana
transcript AT1G30400.2
intron # 25
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G30400.1 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: Vv10s0003g04390.t01 (Vitis vinifera), 5'ss of exon 25
CATCCGAGAAGAATTCAAGTCATGCACAATGCTAATCATCGCTCATCGTCTCAATACTATCATCGACTGTGACAAAGTTCTTGTCCTTGATTCTGGAAAAgtacgtatacaa----aatattc-----gaccactacttgcatcaatttaat---cacttttgagctaacatatattgagattcccaacacctcag----------------------------------------------------------------------------------------------
|||  |||||||||| || ||||| |||||||| || || ||||||||||| ||||| ||||| || |||||   ||||||| | |||||| ||||    |||||  | |||    ||| ||      |  || | ||   ||    ||  |   |   ||||    |  | | ||  || || ||      |  |                                                                                              
CATTAGAGAAGAATTTAAATCATGTACAATGCTCATTATTGCTCATCGTCTAAATACCATCATTGATTGTGATCGAGTTCTTTTGCTTGATGCTGGTCGGgtacgccttcaatttcaatgtttttctggttcatttctcttatttccttgttgctcttgtttggaagagaaaacatgaagcttgcccttgaatgggaaactgctgacagatttgtatgctttcttattgaaatttttggttttatttagtcttttgtcgacgtgtcatgattttaatgtcttccactcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116481322|gb|EG523914.1|EG523914
EST:     TCAATACTATCATCGACTGTGACAAAGTTCTTGTCCTTGATTCTGGAAAA                         GTTCAGGAATTCAGTTCACCGGAGAATCTTCTTTCAAATGGAGAAAGTTCT
genomic: TCAATACTATCATCGACTGTGACAAAGTTCTTGTCCTTGATTCTGGAAAAgtacgtatac ... aacacctcagGTTCAGGAATTCAGTTCACCGGAGAATCTTCTTTCAAATGGAGAAAGTTCT
EST: gi|116442965|gb|EG485557.1|EG485557
EST:     TCAATACTATCATCGACTGTGACAAAGTTCTTGTCCTTGATTCTGGAAAA                         GTTCAGGAATTCAGTTCACCGGAGAATCTTCTTTCAAATGGAGAAAGTTCT
genomic: TCAATACTATCATCGACTGTGACAAAGTTCTTGTCCTTGATTCTGGAAAAgtacgtatac ... aacacctcagGTTCAGGAATTCAGTTCACCGGAGAATCTTCTTTCAAATGGAGAAAGTTCT
EST: gi|116463094|gb|EG505686.1|EG505686
EST:     AAAGTTCTTGTCCTTGATTCTGGAAAA                         GTTCAGGAATTCAGTTCACCGGAGAATCTTCTTTCAAATGGAGAAAGTTCT
genomic: AAAGTTCTTGTCCTTGATTCTGGAAAAgtacgtatac ... aacacctcagGTTCAGGAATTCAGTTCACCGGAGAATCTTCTTTCAAATGGAGAAAGTTCT
EST: gi|116481323|gb|EG523915.1|EG523915
EST:     TCAATACTATCATCGACTGTGACAAAGTTCTTGTCCTTGATTCTGGAAAA                         GTTCAGGAATTCAGTTCACCGGAGAATCTTCTTTCAAATGGAGAAAGTTCT
genomic: TCAATACTATCATCGACTGTGACAAAGTTCTTGTCCTTGATTCTGGAAAAgtacgtatac ... aacacctcagGTTCAGGAATTCAGTTCACCGGAGAATCTTCTTTCAAATGGAGAAAGTTCT