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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGACTTCAGCTACAGTTCCAACAATTGGGGTGTTGGGCTTCCTCCAAAAGGGAAAAACGAACACAACTGGCCACTgtaagtgccgacggaatcgccttcaataaatctgattgctgagtaaaccatacgcccattgcatgtttctgataccagtcagctcctgctgaacatgtctctag

Basic information

species Arabidopsis thaliana
transcript AT5G04360.1
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G04360.1 (Arabidopsis thaliana), 5'ss of exon 24
lower sequence: GLYMA10G34080.1 (Glycine max), 5'ss of exon 24
GCTGGACTTCAGCTACAGTTCCAACAATTGGGGTGTTGGGCTTCCTCCAAAAGGGAAAAACGAACACAACTGGCCACTgtaagtgccgacgga-------atcgcc-ttcaataaatctgattgctgagtaaaccatacgcccattgcatgtttctgataccagtcagctcctgctgaacatgtctctag--------------------------------------------------------------------------------
 || |||||||  |||| |   || ||||||||||| || ||||||||| ||| |||||| ||| | ||||||||||||||||   |     |       ||  || || |  |||| || |      || ||| |   | |||   | | | |   |||    | |||||  | | |     | | |                                                                                  
ACTTGACTTCACATACAATAGTAATAATTGGGGTGTAGGACTTCCTCCACAAGAGAAAAATGAAAAGAACTGGCCACTgtaagcatctgaatattttattattaccatttacaaaatatgctacactggtcaacaacttgtccagcac-tatatgatataattatgagctctgggttattgaatttgtgatgtactactattgttagtttacagcttgtgttgcatctgttttactatataatgatcttgagtctccttcgacttttcag

upper sequence: AT5G04360.1 (Arabidopsis thaliana), 5'ss of exon 24
lower sequence: Vv13s0019g05160.t01 (Vitis vinifera), 5'ss of exon 24
GCTGGACTTCAGCTACAGTTCCAACAATTGGGGTGTTGGGCTTCCTCCAAAAGGGAAAAACGAACACAACTGGCCACTgtaagtgccgacggaatcgccttcaataaatctgattgctgagtaaaccatacgcccattgcatgtttc-tgataccagtcagctcctgctgaacatgtctctag------------------------------------------------------------------------------------------
||| ||||||||||||| ||| ||||| ||||||||||| ||||| ||||||| |||||||||  | || |||||||||||||     |     |  |  |  || | | ||||   || ||      ||    ||   ||  ||   | || |   |||  | ||  |  |  |     |                                                                                            
GCTAGACTTCAGCTACAATTCTAACAACTGGGGTGTTGGCCTTCCACCAAAAGAGAAAAACGAGAAGAATTGGCCACTgtaagcatttattagttttctattcatca-tttgatgaatgtgttgtttttagtttcaaaacaatttgaattattctgatcaatttcttttagagttaatattgtgatgcagagaactctttgctgattattgtttccttacattttgtcttggagaacatgctatctgatatattggaccctgtcttgtttcag