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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTAACGACAAGCTCTTACTTGTTCAAGCACTACGGAAAAATGGAGATGTTGTTGCAGTCACTGGTGATGGTACTAATGATGCTCCTGCCCTCCATGAGgttctctaacaattctacaggttatgtattatgtgttgtgtgtcatctccaaatctgatttttcttttgttgctttggactatag

Basic information

species Arabidopsis thaliana
transcript AT3G21180.1
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G21180.1 (Arabidopsis thaliana), 5'ss of exon 24
lower sequence: GLYMA08G23760.1 (Glycine max), 5'ss of exon 27
TCCTAACGACAAGCTCTTACTTGTTCAAGCACTACGGAAAAATGGAGATGTTGTTGCAGTCACTGGTGATGGTACTAATGATGCTCCTGCCCTCCATGAGgttctctaacaattctacaggt---tatgtattatgtgttgtgtgtcatctccaaatctgatttttcttttgttgctttggactatag-------------
|||||| |||||||| || ||||| ||||| ||||| |||   || || |||||||| ||||| || ||||| || ||||||||||||||||| ||||||||     |    ||  |    |   | ||  |  || |   | ||| | || |||| ||  ||  |||  ||    ||||    | |              
TCCTAATGACAAGCTTTTGCTTGTGCAAGCTCTACGTAAAGGAGGGGAAGTTGTTGCGGTCACAGGAGATGGCACCAATGATGCTCCTGCCCTACATGAGgtctgtcattctttgaatgcatccttttgactgttgagaaatatgttagctacaaaactt-ttcatctcctgaaattttgcttaagaatgaacagcatata

upper sequence: AT3G21180.1 (Arabidopsis thaliana), 5'ss of exon 24
lower sequence: GLYMA07G00630.2 (Glycine max), 5'ss of exon 24
TCCTAACGACAAGCTCTTACTTGTTCAAGCACTACGGAAAAATGGAGATGTTGTTGCAGTCACTGGTGATGGTACTAATGATGCTCCTGCCCTCCATGAGgttctctaacaattctacaggttatgtattatgtgttg-----tgtgtcatctccaaatctgatttttcttt----tgttgctttggactatag------
|||||| |||||||| || ||||| ||||| ||||| |||   || || |||||||| ||||| || || || || ||||||||||||||||| ||||||||           | |  | |     | ||   |||||     |   | | || |||| ||  || |    |    | ||||||  || |  |       
TCCTAATGACAAGCTTTTGCTTGTGCAAGCTCTACGTAAAGGAGGGGAAGTTGTTGCGGTCACAGGAGACGGCACCAATGATGCTCCTGCCCTACATGAGgtctgtcctattctttggatgcatccttttgactgttgagaaataaattagctacaaaactttttatctcctgaaatcttgcttatgaatgaacagaata

upper sequence: AT3G21180.1 (Arabidopsis thaliana), 5'ss of exon 24
lower sequence: GLYMA15G00340.1 (Glycine max), 5'ss of exon 26
TCCTAACGACAAGCTCTTACTTGTTCAAGCACTACGGAAAAATGGAGATGTTGTTGCAGTCACTGGTGATGGTACTAATGATGCTCCTGCCCTCCATGAGgt-tctctaacaattctacaggttatgtattatgtgttgtgtgtcatctccaaatctgatttttcttttgttgctttggactatag--------------
|||||  |||||||| || || || ||||||||||| | |  ||| || |||||||| ||||| || ||||| || |||||||||||||| || |||||||| | | ||    ||  |        |   | |  |         |  |  || | |  | ||  |||| ||  |||     |||               
TCCTACTGACAAGCTGTTGCTCGTGCAAGCACTACGTACAGGTGGTGAAGTTGTTGCTGTCACAGGAGATGGCACCAATGATGCTCCTGCACTTCATGAGgtctgtatatttcttggatgtagagaggtctttaggcctgaaaatactttgaagttttttcttcttttttttagtttctttcataagaatactgcatgga

upper sequence: AT3G21180.1 (Arabidopsis thaliana), 5'ss of exon 24
lower sequence: GLYMA13G44990.1 (Glycine max), 5'ss of exon 26
TCCTAACGACAAGCTCTTACTTGTTCAAGCACTACGGAAAAATGGAGATGTTGTTGCAGTCACTGGTGATGGTACTAATGATGCTCCTGCCCTCCATGAGgttctctaacaattctacaggt-tatgtattatgtgttgtgtgtcatctccaaatctgatt--tttcttttgttgcttt----ggactatag---------
|||||  |||||||| ||  | || ||||||||||| | |  ||| || |||||||| ||||| || ||||| || |||||||||||||| || |||||||| || ||    |  | || ||  | || ||  |   ||    |  | |  |  | |  ||  ||| ||| ||| ||||     || ||  |         
TCCTACTGACAAGCTGTTGATCGTGCAAGCACTACGTACAGGTGGTGAAGTTGTTGCCGTCACAGGAGATGGCACCAATGATGCTCCTGCACTTCATGAGgt-ctgtatatttcttgcatgtacaggtcttgggccctgaaaatactttgaagtttttcttcgtttttttagttactttcttaagaatactgcatggaaat

upper sequence: AT3G21180.1 (Arabidopsis thaliana), 5'ss of exon 24
lower sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 26
TCCTAACGACAAGCTCTTACTTGTTCAAGCACTACGGAAAAATGGAGATGTTGTTGCAGTCACTGGTGATGGTACTAATGATGCTCCTGCCCTCCATGAGgttctctaacaattctacaggttatgtattat------gtgttgtgtgtcatctccaaatctgatttttcttttgttgctttggactatag--------------
|||||| || || ||  | ||||| ||||| ||||| ||   ||| || |||||||| || || || ||||| ||||||||||||||||| || |||||||||   | ||  ||||| ||||  ||| || |      ||||||| || | | ||    | |  ||  |||||  ||  ||   | |  ||              
TCCTAATGATAAACTTCTCCTTGTGCAAGCGCTACGCAAGGCTGGTGAGGTTGTTGCCGTAACAGGAGATGGCACTAATGATGCTCCTGCACTTCATGAGgtt---tgacc-ttctataggtcttgttttgttttgttgtgttgtttggcctttctgt-ttttcttcctctttctttctttcttattcaagtgagaaatctggta