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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGATTTGACATCACACAGATTCCGGATGTTTACGATTCATGCAAgtaagttgtttttagtgtatctctagatttacacctagctttagttactcgtttttgaataagccgtaatatgttattctcaccag

Basic information

species Arabidopsis thaliana
transcript AT3G01310.1
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G01310.2 (Arabidopsis thaliana), 5'ss of exon 24
lower sequence: GLYMA09G37610.1 (Glycine max), 5'ss of exon 21
CCGATTTGACATCACACAGATTCCGGATGTTTACGATTCATGCAAgtaagttgtttttagtgtatctctagatttacacctagctttagttactcgtttttgaataagccgtaat-atgttattctcaccag------------------
 || ||||||||||| || ||||| ||||| || |||||||||||||||||| |||      | ||  | | |||  |    |  |||      | |||    ||   |  || | || | | |    | |                   
GCGTTTTGACATCACCCAAATTCCTGATGTCTATGATTCATGCAAgtaagttattt-----atttccttgggtttttatgatgacttaaaaggacttttccagatctacaatatttatttcaatactgcaatcatggagattgattagat

upper sequence: AT3G01310.2 (Arabidopsis thaliana), 5'ss of exon 24
lower sequence: GLYMA18G49000.1 (Glycine max), 5'ss of exon 23
CCGATTTGACATCACACAGATTCCGGATGTTTACGATTCATGCAAgtaagttgtttttagtgtatctctagatttacacctagctttagttactcgtttttgaataagccgtaat-atgttattctcaccag------------------
 || ||||||||||| || ||||| ||||| || |||||||||||||||||| |||      | ||  | | |||  |    |  ||||| |  | |||    ||   |  || |  ||  ||  |    |                   
GCGCTTTGACATCACCCAAATTCCTGATGTCTATGATTCATGCAAgtaagttattt-----atttccttgggtttttatgatgacttagtaagacttttccagatctacaatatttgtgcaatcatggagattgattagataacttgtga

upper sequence: AT3G01310.2 (Arabidopsis thaliana), 5'ss of exon 24
lower sequence: GLYMA19G02260.1 (Glycine max), 5'ss of exon 21
CCGATTTGACATCACACAGATTCCGGATGTTTACGATTCATGCAAgtaagttgtttttagtgtatctctagattt----acacctagctttagttactcgtttttgaataag--ccgtaatatgttattctcaccag------------
 || ||||| ||||| || ||||| |||||||| |||||||||||||||||  | | |  | ||| ||| | |||    | || |||||    || |    | |  |||||     ||   |  ||    | | | |            
ACGCTTTGATATCACCCAAATTCCTGATGTTTATGATTCATGCAAgtaagtcatctct--tttatttcttgttttgatgatacgtagctc--atttccaactctacaataatatttgtgcaacattccagttatcggtatagattatga