Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   		30  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAAAATTTGGGATCCAAGTCTGCGTGGTTCTGAACTTCGAGCAACTTTGAAAGGACATACTGGgtatacactatttcttattcaccttgatggctctcgggagttatgtttttttttgttaatttttcatatgtggtggtttctttaacagcgcttcctttcttgttttcttttcaacttttgatgtag

Basic information

species Arabidopsis thaliana
transcript AT1G49040.1
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G49040.1 (Arabidopsis thaliana), 5'ss of exon 24
lower sequence: LOC_Os01g39380.2 (Oryza sativa), 5'ss of exon 24
GTTAAAATTTGGGATCCAAGTCTGCGTGGTTCTGAACTTCGAGCAACTTTGAAAGGACATACTGGgtatacactatttcttattcaccttgatggctctcgggagttatgtttttttttgttaatttttca-tatgtggtggtttctttaacagcgcttcctttcttgttttcttttcaacttttgatgtag
|| ||||| |||||||||||| |||||||||||||||||||  ||||  | ||||| || ||| |||| | |  ||     ||  |  || |    |     ||  ||||   | |     |  |  |||| | ||| |||   |   ||     ||||  | ||                           
GTAAAAATATGGGATCCAAGTTTGCGTGGTTCTGAACTTCGGACAACACTTAAAGGGCACACTAGgtagaaatcatc----atctaagttaaccagttcaatgaaatatgcactatcaccatcgtagttcactgtgttgtgaactaactagatctgctta-tctcagaca----------------------

upper sequence: AT1G49040.1 (Arabidopsis thaliana), 5'ss of exon 24
lower sequence: GRMZM2G074466_T01 (Zea mays), 5'ss of exon 5
GTTAAAATTTGGGATCCAAGTCTGCGTGGTTCTGAACTTCGAGCAACTTTGAAAGGACATACTGGgtatacactatttcttattcaccttgatggctctcgggagttatgtttttttttgttaatttttcatatgtggtggtttctttaacagcgcttcctttcttgttttcttttcaacttttgatgtag
|| |||||||||||||||||| |||||||||||||||||||||||||  | ||||| |||||| ||||    | |||   ||     | |  |   |   |      || | |   || | |  | || ||   |||   |||| ||||      | || | |||  |  |  |                 
GTAAAAATTTGGGATCCAAGTTTGCGTGGTTCTGAACTTCGAGCAACACTTAAAGGGCATACTAGgtagtagccattatctaaattacatattaaatactg-----cat-tgtcacttcgatcgtattgca---gtgtctgttttttta-tgatacatc-tgtctgatacttctgg---------------

upper sequence: AT1G49040.1 (Arabidopsis thaliana), 5'ss of exon 24
lower sequence: GLYMA05G35210.1 (Glycine max), 5'ss of exon 7
GTTAAAATTTGGGATCCAAGTCTGCGTGGTTCTGAACTTCGAGCAACTTTGAAAGGACATACTGGgtatacactatttcttattcaccttgatggctctcgggagttatgtttttttttgttaatttttcata--tgtggtggtttctttaacagcgcttcctttcttgttttcttttcaacttttgatgtag
||||| || |||||||| ||||| ||||||||||||||  | |||||||| ||||| |||||| |||     ||   ||| | ||| |    |  || |  ||  ||     | |||   | | |  |   ||    || |  | |||||||  |                                      
GTTAAGATCTGGGATCCTAGTCTTCGTGGTTCTGAACTCAGGGCAACTTTAAAAGGGCATACTAGgtt----cttcctctcactcatcaaatttcctgtatggttttcaacatctttgaataagtaatgtgtaaccttgcttctgtctttaaatgtag-----------------------------------

upper sequence: AT1G49040.1 (Arabidopsis thaliana), 5'ss of exon 24
lower sequence: GLYMA08G04510.1 (Glycine max), 5'ss of exon 24
GTTAAAATTTGGGATCCAAGTCTGCGTGGTTCTGAACTTCGAGCAACTTTGAAAGGACATACTGGgtatacactatttcttattcaccttgatggctctcgggagttatgtttttttttgttaatttttcatatgtggtggtttctttaacagcgcttcctttcttgttttcttttcaacttttgatgtag
||||| || |||||||| ||||| ||||||||||||||  | |||||||| ||||| |||||| |||     || | ||| | |||  || |     ||     ||| |     | ||||  |||   | | ||   |||  | ||||       |||    | | |                        
GTTAAGATCTGGGATCCTAGTCTTCGTGGTTCTGAACTCAGGGCAACTTTAAAAGGCCATACTAGgtt----ctttctctcactca--ttaaatttcctgtatggttgtcaacatctttg--aataagtaaaataatgtgaatcctttcttctgtctttaaatgtag------------------------

upper sequence: AT1G49040.1 (Arabidopsis thaliana), 5'ss of exon 24
lower sequence: Vv17s0000g03950.t01 (Vitis vinifera), 5'ss of exon 24
GTTAAAATTTGGGATCCAAGTCTGCGTGGTTCTGAACTTCGAGCAACTTTGAAAGGACATACTGGgtatacact-----------atttctta-ttcaccttgatggctctcgggagttatgtttttttttgttaatttttcatatgtggtggtttctttaac---agcgcttccttt------------cttgttttcttttcaacttttgatgtag------
|| || || |||||||| | ||| ||||||||||||||| | ||||||||||||||||||||   ||||  |||           |||  ||| ||     ||||  || |          ||||||||   ||  ||| || | | |  ||| | || | |    ||   ||   ||            ||  ||||| ||||   ||| ||| |        
GTGAAGATCTGGGATCCTACTCTTCGTGGTTCTGAACTTAGGGCAACTTTGAAAGGACATACAAAgtatttactccacaacccatattctttaatttttgctgattccttttttccaactggtttttttcctttcctttctctttttttttggctactatgatttaagtatttgtctttacattaaattactgattttcctttcgcttttggatctctacatag