Sequence
atgc intronic sequence ATGC exonic sequenceTCCATTTAGTGAACACAATGATGCTGACCTCTGGGAGGCTCTAGAAAGGGCGCATATAAAAGATGTCATCGATAGGAATCCTTTTGGCCTAGATGCAGAGgtatagtttatctttagtgacatatattagttagaagaattctttgatttcttatggagatggctgatcaaagtgttactttaatctgtaaag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G30420.1 |
intron # | 24 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G30420.1 (Arabidopsis thaliana), 5'ss of exon 24
lower sequence: LOC_Os04g52900.1 (Oryza sativa), 5'ss of exon 24
TCCATTTAGTGAACACAATGATGCTGACCTCTGGGAGGCTCTAGAAAGGGCGCATATAAAAGATGTCATCGATAGGAATCCTTTTGGCCTAGATGCAGAGgtatagtttatctttagtgacatatattagttagaagaattctttga--tttcttatggagatggctg-----atcaaagtgtta-ctttaatctgtaaag-
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TCCTTTTAATGAGCACAATGATGCGGATCTCTGGGAAGCGCTTGAAAGGGCTCATCTAAAAGATGTCATAAGGAGGAATGCTCTGGGACTAGATGCTGAGgtacgtagtttgttta-tcctttat-ttagttcagaccattatttcactttttttaagatgatgtatgcctgtatagacttgtcagtttttttttgtcagtc
upper sequence: AT1G30420.1 (Arabidopsis thaliana), 5'ss of exon 24
lower sequence: GRMZM2G084181_T01 (Zea mays), 5'ss of exon 24
TCCATTTAGTGAACACAATGATGCTGACCTCTGGGAGGCTCTAGAAAGGGCGCATATAAAAGATGTCATCGATAGGAATCCTTTTGGCCTAGATGCAGAGgtatagtttatctttagtgacatatattagttagaagaattctttgatttcttatggagatggctgatcaaagtgttactttaatctgtaaag-------
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TCCCTTTAATGAGCACAATGATGCGGACCTCTGGGAGGCTCTGGAAAGGGCTCATCTAAAAGATGTTATAAGGAGGAATTCTTTAGGATTGGATGCTGAGgtatgcaattttcatgattttattcatggaagtttacgactattgattctcggctgtcattttattttacaaatgacacacacacaagtattccactttt
upper sequence: AT1G30420.1 (Arabidopsis thaliana), 5'ss of exon 24
lower sequence: GLYMA06G46940.1 (Glycine max), 5'ss of exon 26
TCCATTTAGTGAACACAATGATGCTGACCTCTGGGAGGCTCTAGAAAGGGCGCATATAAAAGATGTCATCGATAGGAATCCTTTTGGCCTAGATGCAGAGgta--tagtttatctttagtgacatatattagttagaagaattctttgatttcttatggagatggctgatcaaagtgttactttaatctgtaaag--------------------------------
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TCCATTTAATGAACACAATGATGCTGACCTATGGCAAGCTTTAGAAAGGGCGCATTTGAAGGATGTAATAAGAAGAAATACGTTTGGTCTAGATGCTAAGgtaggtaacagattatggtataattatattagtacctctatatgattggtttttccttgaga-gtctttttgaattatcaattgcaaatatgaaatatgacaaggtaatctcttgtactgaataaag
upper sequence: AT1G30420.1 (Arabidopsis thaliana), 5'ss of exon 24
lower sequence: Vv10s0003g04470.t01 (Vitis vinifera), 5'ss of exon 25
TCCATTTAGTGAACACAATGATGCTGACCTCTGGGAGGCTCTAGAAAGGGCGCATATAAAAGATGTCATCGATAGGAATCCTTTTGGCCTAGATGCAGAGgtatagttt-----atctttagtgacatatattagttagaagaattctttgatttcttatggagatggctgatcaaagtgttactttaatctgtaaag---
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TCCTTTCAATGAACACAATGACGCTGACCTTTGGGAGGCTTTAGAGAGGGCACATCTCAAGGATGTCATCAGGAGAAATTCTTTTGGTCTGGATGCTGAGgtataatattcaagattttcttagttaaatctttatgatttttttttaccaaacacttcagagtttgaaccctaagagtgg-gttataattactggataatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86073144|gb|DR368901.1|DR368901EST: CGCATATAAAAGATGTCATCGATAGGAATCCTTTTGGCCTAGATGCAGAG GTCTCTGAGGGAGGTGAGAACTTCAGTGTGGGGCAAAGACAACTGCTGAGT
genomic: CGCATATAAAAGATGTCATCGATAGGAATCCTTTTGGCCTAGATGCAGAGgtatagttta ... atctgtaaagGTCTCTGAGGGAGGTGAGAACTTCAGTGTGGGGCAAAGACAACTGCTGAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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TCCATTTAGTGAACACAATGATGCTGACCTCTGGGAGGCTCTAGAAAGGGCGCATATAAAAGATGTCATCGATAGGAATCCTTTTGGCCTAGATGCAGAGgtatagtttatctttagtgacatatattagttagaagaattctttgatttcttatggagatggctgatcaaagtgttactttaatctgtaaag
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