Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGGAACTGTGGCAGCAGACATACAGAGGTCAAGATATGGATTACATACGAATACACTCAGATTCCGAAGGTGCAGGCACCCGCTCTTACAGCTACAAGgtatgctacagaattgacaacatactttacgatgtgatcatcattagcatcgttgtcaaccttgttttttcttag

Basic information

species Arabidopsis thaliana
transcript AT2G31970.1
intron # 23
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G31970.1 (Arabidopsis thaliana), 5'ss of exon 23
lower sequence: GRMZM2G030128_T02 (Zea mays), 5'ss of exon 23
AAGGGAACTGTGGCAGCAGACATACAGAGGTCAAGATATGGATTACATACGAATACACTCAGATTCCGAAGGTGCAGGCACCCGCTCTTACAGCTACAAGgtatgctacagaattgacaacatactttacgatgtgatcatcattagcatcgttgtcaaccttgttttttcttag-
 | |||||||||||| |||||||||||||| || ||||| ||||||||| | ||| | || ||||| || ||||| ||||| || || |||||||||   ||||| |     | | |   |     | |   | |  |  | | |   |   || | | || ||     ||||   
CAAGGAACTGTGGCAACAGACATACAGAGGCCAGGATATTGATTACATAAGCATAAATTCTGATTCTGAGGGTGCTGGCACTCGATCATACAGCTACCGCgtatgttgagctagttattgctagggtaaaattattttattgaattttaat-ttcttagccctgcgcaatctttag

upper sequence: AT2G31970.1 (Arabidopsis thaliana), 5'ss of exon 23
lower sequence: GLYMA18G00530.1 (Glycine max), 5'ss of exon 21
AAGGGAACTGTGGCAGCAGACATACAGAGGTCAAGATATGGATTACATACGAATACACTCAGATTCCGAAGGTGCAGGCACCCGCTCTTACAGCTACAAGgtatgctaca--gaattg--acaaca-tactttacgatgtgatc----atcat--tagcatcgttgtcaaccttgttttttcttag---------
||||||| |||||||||| || || ||||| |||||||| || |||||  | || || ||||| |||||||||||||| ||||| || ||||| |||||||| ||  | |  | ||||  ||| || | | ||  || |   ||    ||| |  ||  ||| |||  ||  ||||| ||    |          
AAGGGAATTGTGGCAGCAAACCTATAGAGGACAAGATATAGACTACATCAGTATTCATTCAGACTCCGAAGGTGCAGGGACCCGTTCCTACAGTTACAAGgtttgacatatcgtattgaaacaccaattccttgagaagctgtctaatatcctcataaaatctttga-aatattgttcttgtgcattccatacag

upper sequence: AT2G31970.1 (Arabidopsis thaliana), 5'ss of exon 23
lower sequence: Vv05s0029g00300.t01 (Vitis vinifera), 5'ss of exon 4
AAGGGAACTGTGGCAGCAGACATACAGAGGTCAAGATATGGATTACATACGAATACACTCAGATTCCGAAGGTGCAGGCACCCGCTCTTACAGCTACAAGgtatgctacagaattgacaacatactttacgatgtgatcatcattagcatcgttgtcaaccttgt----tttttcttag---
||| || ||||||||||| |||||||| || |||||||| || | |||  |||| || |||||||| |||||||| || || || ||||||||||||||||||||  | | || |  |    |  ||||  || |     |  |     |   | |     || |    | ||| |  |   
AAGAGAGCTGTGGCAGCAAACATACAGGGGGCAAGATATAGACTGCATTAGAATTCATTCAGATTCTGAAGGTGCTGGGACTCGATCTTACAGCTACAAGgtatggaagaaaagtt-ctttcttttttagtatttcccttttttggtttttcctttttgttttataggatatttttgtgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86064734|gb|DR360491.1|DR360491
EST:     GAATACACTCAGATTCCGAAGGTGCAGGCACCCGCTCTTACAGCTACAAG                         GTTCTTATGCAGACTGGTGATACAGAACTTGAAATGAGAGGAAGATGCAGT
genomic: GAATACACTCAGATTCCGAAGGTGCAGGCACCCGCTCTTACAGCTACAAGgtatgctaca ... tttttcttagGTTCTTATGCAGACTGGTGATACAGAACTTGAAATGAGAGGAAGATGCAGT
EST: gi|86064733|gb|DR360490.1|DR360490
EST:     GAATACACTCAGATTCCGAAGGTGCAGGCACCCGCTCTTACAGCTACAAG                         GNTCTTATGCAGACTGGTGATACAGAACTTGAAATGAGAGGAAGATGCAGT
genomic: GAATACACTCAGATTCCGAAGGTGCAGGCACCCGCTCTTACAGCTACAAGgtatgctaca ... tttttcttagGTTCTTATGCAGACTGGTGATACAGAACTTGAAATGAGAGGAAGATGCAGT
EST: gi|86064732|gb|DR360489.1|DR360489
EST:     GAATACACTCAGATTCCGAAGGTGCAGGCACCCGCTCTTACAGCTACAAG                         GTTCTTATGCAGACTGGTGATACAGAACTTGAAATGAGAGGAAGATGCAGT
genomic: GAATACACTCAGATTCCGAAGGTGCAGGCACCCGCTCTTACAGCTACAAGgtatgctaca ... tttttcttagGTTCTTATGCAGACTGGTGATACAGAACTTGAAATGAGAGGAAGATGCAGT