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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGGTCTGAGGACAAATGAAAAGGAACGTGTTCTGGTTCTTGCAGCCACAAATAGACCTTTTGACCTTGACGAGGCTGTCATTAGAAGGTTGCCTCATAGgtaatttatatatagcttccttgttggactaagctttctgtcaaattgacatgtcgtaacaagtttttggtattggcttctgcag

Basic information

species Arabidopsis thaliana
transcript AT1G62130.1
intron # 23
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G62130.1 (Arabidopsis thaliana), 5'ss of exon 23
lower sequence: LOC_Os11g43970.1 (Oryza sativa), 5'ss of exon 24
ACGGTCTGAGGACAAATGAAAAGGAACGTGTTCTGGTTCTTGCAGCCACAAATAGACCTTTTGACCTTGACGAGGCTGTCATTAGAAGGTTGCCTCATAGgtaatttatatatagcttccttgttggactaagctttctgtcaaattgacatgtcgtaa----caagtttttggt-attggcttctgcag---
| ||  |  | || || || || |||||||| ||||||||||  ||||||||||| ||||| ||||| || |||||||||||||| ||||| || |  |||| |   |  |||| | |  | |||||  |  |  |  ||  ||||||   | |  | |     ||   ||||||  ||   | || | |   
ATGGATTACGCACTAAAGATAAAGAACGTGTACTGGTTCTTGGTGCCACAAATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtgac--agctataaccttgt-gttggggttgggataatgaaaaattgctgtttgttgatttctaaccatttggtcgttaattactactgtag

upper sequence: AT1G62130.1 (Arabidopsis thaliana), 5'ss of exon 23
lower sequence: GRMZM2G157621_T03 (Zea mays), 5'ss of exon 24
ACGGTCTGAGGACAAATGAAAAGGAACGTGTTCTGGTTCTTGCAGCCACAAATAGACCTTTTGACCTTGACGAGGCTGTCATTAGAAGGTTGCCTCATAGgtaatttatatatagcttccttgttggactaagctttctgtcaaattgacatgtcgtaacaagtt-tttggtattggcttctg--cag
| ||||| |||||||| || || |||||||||||||| ||||| ||||| ||||| || ||||| ||||||||||||||  | || ||| | ||    |||||| ||  |     || | |  ||   |||  ||||   || || ||  |  | || | || |     ||      |||||   |||
ATGGTCTTAGGACAAAAGACAAAGAACGTGTTCTGGTACTTGCTGCCACTAATAGGCCATTTGATCTTGACGAGGCTGTTGTCAGGAGGCTCCCCAGGAGgtaaattgca-----ctccgtatttatgcta--cttttcttccaactgtgacatggttataaataacccggccacaacttctcttcag

upper sequence: AT1G62130.1 (Arabidopsis thaliana), 5'ss of exon 23
lower sequence: GRMZM2G354532_T01 (Zea mays), 5'ss of exon 3
ACGGTCTGAGGACAAATGAAAAGGAACGTGTTCTGGTTCTTGCAGCCACAAATAGACCTTTTGACCTTGACGAGGCTGTCATTAGAAGGTTGCCTCATAGgtaatttatatatagcttccttg--ttggacta---agcttt----ctgtcaaattgacatgtcg-taacaagtttttggtattggcttctgcag------------------------------------------------------------------------------------
| ||  || | || || || ||||| ||||| || |||||||  || |||||||||||||||||||| ||||||||||| ||||| ||||| || |  |||||| |  | | |   |   | |   |||| ||   || |      ||||    |||   ||| |   |    | | |  |  | |||| ||                                                                                       
ATGGGTTGCGCACTAAAGATAAGGAGCGTGTGCTTGTTCTTGGTGCTACAAATAGACCTTTTGACCTGGACGAGGCTGTGATTAGGAGGTTCCCCCGCAGgtaaatgttgtttcattcagtgggactggattacccagttgcataactgtagttttgttctgtgggccatggttatctaatcgttgcttttgggtagcaatagttttgtttggttgggtgggactatcaaatcgctgctgctggttccatattcatcaccatcttactcattgtttcag

upper sequence: AT1G62130.1 (Arabidopsis thaliana), 5'ss of exon 23
lower sequence: GRMZM2G052403_T01 (Zea mays), 5'ss of exon 15
ACGGTCTGAGGACAAATGAAAAGGAACGTGTTCTGGTTCTTGCAGCCACAAATAGACCTTTTGACCTTGACGAGGCTGTCATTAGAAGGTTGCCTCATAGgtaatttatatatagcttccttgt-tggactaagctttctgtcaaattgacatgtcgta-acaagtttttggtattggcttctgcag-------------
| || ||| | || || || ||||| ||||| || |||||||  || |||||||||||||||||||| ||||||||||| ||||| ||||| || |  |||| | |   || |   |   | || |||  | | |    ||   |  ||    || |   |    | | |  |  | |||  ||                
ATGGACTGCGCACTAAAGATAAGGAGCGTGTGCTTGTTCTTGGTGCTACAAATAGACCTTTTGACCTGGACGAGGCTGTGATTAGGAGGTTCCCCCGCAGgtgaatataattttattcaatggtgtgggatgacccggttgggtatctgttcagtggcccatggttctctaattgttgctgttgggtagcaatagttttg

upper sequence: AT1G62130.1 (Arabidopsis thaliana), 5'ss of exon 23
lower sequence: GRMZM2G435582_T01 (Zea mays), 5'ss of exon 4
ACGGTCTGAGGACAAATGAAAAGGAACGTGTTCTGGTTCTTGCAGCCACAAATAGACCTTTTGACCTTGACGAGGCTGTCATTAGAAGGTTGCCTCATAGgtaatttatatatagcttccttg--ttggacta---agcttt----ctgtcaaattgacatgtcg-taacaagtttttggtattggcttctgcag------------------------------------------------------------------------------------
| ||  ||   || || || |||||  ||||  | |||||||  |  |||||||||||||||||||| ||||||||||| ||||| ||||| || | ||||||| |  | | |   |   | |   |||| ||   || |      ||||    |||   ||| |   |    | | |  |  | |||| ||                                                                                       
ATGGGTTGCACACTAAAGATAAGGAGTGTGTGGTTGTTCTTGGTGTTACAAATAGACCTTTTGACCTGGACGAGGCTGTGATTAGGAGGTTCCCCCGTAGgtaaatgttgtttcattcagtgggactggattacccagttgcataactgtagttttgttctgtgggccatggttatctaattgttgcttttgggtagcaatagtttcgtttggttgggtgggactatcaaatcgctgctgctggttccatattcatcaccatcttactcattgtttcag

upper sequence: AT1G62130.1 (Arabidopsis thaliana), 5'ss of exon 23
lower sequence: GRMZM2G126453_T02 (Zea mays), 5'ss of exon 9
ACGGTCTGAGGACAAATGAAAAGGAACGTGTTCTGGTTCTTGCAGCCACAAATAGACCTTTTGACCTTGACGAGGCTGTCATTAGAAGGTTGCCTCATAGgtaatttatatatagcttccttg--ttggacta---agcttt----ctgtcaaattgacatgtcg-taacaagtttttggtattggcttctgcag------------------------------------------------
| ||  || | || || || ||||| ||||| || |||||||  || |||||||| ||||||||||| ||||||||||| ||||| ||||| || |  |||||| |  | | |   |   | |   |||| ||   || | |    ||||    |||    || |   |  | | | |  |  | |||| ||                                                   
ATGGGTTGCGCACTAAAGATAAGGAGCGTGTGCTTGTTCTTGGTGCTACAAATAGGCCTTTTGACCTCGACGAGGCTGTGATTAGGAGGTTCCCCCGCAGgtaaatgttgtttcattcagtgggactggattacccagttgtataactgtagttttgttcggtgggccatgattatctaatcgttgcttttgggtagcaatagtttggttccatattcatcaccatcttactcattgtttcag

upper sequence: AT1G62130.1 (Arabidopsis thaliana), 5'ss of exon 23
lower sequence: GLYMA04G37050.1 (Glycine max), 5'ss of exon 7
ACGGTCTGAGGACAAATGAAAAGGAACGTGTTCTGGTTCTTGCAGCCACAAATAGACCTTTTGACCTTGACGAGGCTGTCATTAGAAGGTTGCCTCATAGgtaa--tttatatatagcttccttgttggactaagctttctgtcaaattgacatgtcgtaacaagtttttggtattggcttctgcag-----------------------------------------------------
| ||  |  | ||||| || |  || || ||||| || ||||||||||| ||||| ||||||||||| || |||||||||||| | ||| ||||||  |||| |  |  || |  | || |  |      |     ||| ||     ||        | |    | |  |||   ||| |   |                                                        
ATGGCTTACGCACAAAGGATACTGAGCGAGTTCTTGTGCTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAGGCTGTCATTCGGAGGCTGCCTCGGAGgtgaactccatgttcaactgctcttcaattccttcttttttgctcttttttgggaagggaggggggtggtgggggtgggtagggtgttaatggaactaataaatgttcgaagttttcttaatcttattggtcttctgcag

upper sequence: AT1G62130.1 (Arabidopsis thaliana), 5'ss of exon 23
lower sequence: GLYMA05G03270.2 (Glycine max), 5'ss of exon 20
ACGGTCTGAGGACAAATGAAAAGGAACGTGTTCTGGTTCTTGCAGCCACAAATAGACCTTTTGACCTTGACGAGGCTGTCATTAGAAGGTTGCCTCATAGgtaa-----tttatatatagcttccttgttggactaagctttctgtcaaattga--catgtcgtaa-caagtttttggta----ttggcttctgcag
| ||  |  | || || ||||  || || ||||| || || |||||||| || || |||||||||||||||||||||||||| || ||| ||||    |||| |     || |  | |   |   ||      |  |   || ||| |    ||  |    | |||  || ||||| |||    ||| |||  ||||
ATGGCTTACGCACGAAGGAAACAGAGCGAGTTCTTGTGCTGGCAGCCACTAACAGGCCTTTTGACCTTGACGAGGCTGTCATAAGGAGGATGCCAAGAAGgtgaatatattcaactgtgcttcaattccccttcctattattttgtaagggggaggcccaacataagtaaattttttgtaattattgtctttggcag

upper sequence: AT1G62130.1 (Arabidopsis thaliana), 5'ss of exon 23
lower sequence: GLYMA06G17940.1 (Glycine max), 5'ss of exon 24
ACGGTCTGAGGACAAATGAAAAGGAACGTGTTCTGGTTCTTGCAGCCACAAATAGACCTTTTGACCTTGACGAGGCTGTCATTAGAAGGTTGCCTCATAGgtaa--tttatatatagcttccttgttggactaagctttctgtcaaattgacatgtcgtaacaagtttttggtattggcttctgcag---------------------------------------------------
| ||  |  | ||||| || |  || || ||||| || ||||||||||| ||||| ||||||||||| || |||||||||||  | ||| ||||||  |||| |  |  || |  | || |  | |          ||| ||     ||        | |    | |  ||| | ||| |                                                          
ATGGCTTACGCACAAAGGATACCGAGCGAGTTCTTGTACTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAGGCTGTCATACGGAGGCTGCCTCGGAGgtgaactccatgttcaactgcact-tcaattccttttttttgctcttttttgggaagggagtggggtggtgggagtgggtaggatgttaatggaactaatttgtttgaagttttcttaatcatattggtcttctgcag

upper sequence: AT1G62130.1 (Arabidopsis thaliana), 5'ss of exon 23
lower sequence: GLYMA17G13850.1 (Glycine max), 5'ss of exon 22
ACGGTCTGAGGACAAATGAAAAGGAACGTGTTCTGGTTCTTGCAGCCACAAATAGACCTTTTGACCTTGACGAGGCTGTCATTAGAAGGTTGCCTCATAGgtaa-----tttatatata---gcttccttgttggactaagctttctgtcaaattgacatg--tcgtaacaagtt----tttggta----ttggcttctgcag
| ||  |  | || || ||||  ||  | ||||| || || || ||||| || || |||||||||||||||||||||||||| || ||| ||||    |||| |     |||||  |     |||||  |         |   || ||| |||  |  | |   |   | |||||    ||| |||    |||  || |||||
ATGGGTTACGCACGAAGGAAACCGAGAGAGTTCTTGTCCTGGCTGCCACTAACAGGCCTTTTGACCTTGACGAGGCTGTCATAAGGAGGATGCCAAGAAGgtgagtacctttattcaactgtgcttcaattccccttccaatattttgtaaaagggggagggaccagcataagttaaccttttgtaatatttgttttttgcag

upper sequence: AT1G62130.1 (Arabidopsis thaliana), 5'ss of exon 23
lower sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 24
ACGGTCTGAGGACAAATGAAAAGGAACGTGTTCTGGTTCTTGCAGCCACAAATAGACCTTTTGACCTTGACGAGGCTGTCATTAGAAGGTTGCCTCATAGgtaatttat-atatagcttccttgttggactaagctttctgtcaaattgacatgtcgtaac--aagtttttggtattgg-----cttctgcag
| ||  || | ||||| || |  ||| | |||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | |||||||   || |   |||    |||||||||||  ||     | |  |  |||    |  ||  |  | ||  ||| |||     ||| | |||
ATGGCTTGCGCACAAAAGATACCGAAAGGGTTCTGGTGCTTGCAGCCACAAATAGACCTTTTGACCTTGATGAGGCTGTTATTAGAAGGTTGCCGCGTAGgtaaggcatcactgagccattttgttggactatcctact--ttatttccacaaactgggacttagttcttctgtaatggttcatcttttacag