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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGGATTTTAATTGATGAATGCGACATTGGAAGATTTGGACTGATGGACCTACGTAAAGTGCTCGGAATTATACCGCAAGCGCCAGTTCTTTTCTCAGgtatgtcttgcatttcttctggtgcttatatttattttcctgcttctggtatttatctttcttaaagtcaaaataatgtatactatgccaataacttatattaag

Basic information

species Arabidopsis thaliana
transcript AT1G30400.2
intron # 23
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G30400.1 (Arabidopsis thaliana), 5'ss of exon 24
lower sequence: Vv10s0003g04390.t01 (Vitis vinifera), 5'ss of exon 23
GGAAGGATTTTAATTGATGAATGCGACATTGGAAGATTTGGACTGATGGACCTACGTAAAGTGCTCGGAATTATACCGCAAGCGCCAGTTCTTTTCTCAGgtatgtcttgcatttcttctggtgcttatatttattttc-ctgcttctggtatttatctttcttaaagtcaaaataatgtatactatgccaataacttatattaag
||||| || || |||||||| || ||||||  ||  |||||||||| ||| ||||||||||| || || |||||||| ||| | ||||||||||||||||||||    | ||| | |  |  || || |  | |   |  | |||     |||||    | ||     |     |  |  ||    |     |   ||        
GGAAGAATCTTGATTGATGATTGTGACATTTCAAAGTTTGGACTGAGGGATCTACGTAAAGTTCTTGGTATTATACCACAATCACCAGTTCTTTTCTCAGgtatac--tacatctataatcttggttgtgatcaggctaacagctaggcatatttgatctactctccattgttttccttgatttgcttgatgtggttttccc----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116481322|gb|EG523914.1|EG523914
EST:     CCGCAAGCGCCAGTTCTTTTCTCAG                         GTACCGTGAGATTCAATCTTGACCCATTTAGTGAACACAACGACGCCGATC
genomic: CCGCAAGCGCCAGTTCTTTTCTCAGgtatgtcttg ... ttatattaagGTACCGTGAGATTCAATCTTGACCCATTTAGTGAACACAACGACGCCGATC
EST: gi|116442965|gb|EG485557.1|EG485557
EST:     CCTACGTAAAGTGCTCGGAATTATACCGCAAGCGCCAGTTCTTTTCTCAG                         GTACCGTGAGATTCAATCTTGACCCATTTAGTGAACACAACGACGCCGATC
genomic: CCTACGTAAAGTGCTCGGAATTATACCGCAAGCGCCAGTTCTTTTCTCAGgtatgtcttg ... ttatattaagGTACCGTGAGATTCAATCTTGACCCATTTAGTGAACACAACGACGCCGATC
EST: gi|116463083|gb|EG505675.1|EG505675
EST:     CCTACGTAAAGTGCTCGGAATTATACCGCAAGCGCCAGTTCTTTTCTCAG                         GTACCGTGAGATTCAATCTTGACCCATTTAGTGAACACAACGACGCCGATC
genomic: CCTACGTAAAGTGCTCGGAATTATACCGCAAGCGCCAGTTCTTTTCTCAGgtatgtcttg ... ttatattaagGTACCGTGAGATTCAATCTTGACCCATTTAGTGAACACAACGACGCCGATC
EST: gi|116442966|gb|EG485558.1|EG485558
EST:     CCTACGTAAAGTGCTCGGAATTATACCGCAAGCGCCAGTTCTTTTCTCAG                         GTACCGTGAGATTCAATCTTGACCCATTTAGTGAACACAACGACGCCGATC
genomic: CCTACGTAAAGTGCTCGGAATTATACCGCAAGCGCCAGTTCTTTTCTCAGgtatgtcttg ... ttatattaagGTACCGTGAGATTCAATCTTGACCCATTTAGTGAACACAACGACGCCGATC
EST: gi|116481323|gb|EG523915.1|EG523915
EST:     CCGCAAGCGCCAGTTCTTTTCTCAG                         GTACCGTGAGATTCAATCTTGACCCATTTAGTGAACACAACGACGCCGATC
genomic: CCGCAAGCGCCAGTTCTTTTCTCAGgtatgtcttg ... ttatattaagGTACCGTGAGATTCAATCTTGACCCATTTAGTGAACACAACGACGCCGATC
EST: gi|125227871|gb|EL241956.1|EL241956
EST:     GGAATTATACCGCAAGCGCCAGTTCTTTTCTCTAG                         GTACCGTGAGATTCAATCTTGACCCATTTAGTGAACACAACGACGCCGAT
genomic: GGAATTATACCGCAAGCGCCAGTTCTTTTCTC-AGgtatgtcttg ... ttatattaagGTACCGTGAGATTCAATCTTGACCCATTTAGTGAACACAACGACGCCGAT