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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTTGGTGAGGGTGAGAAGTATGTCAAAGCTGTCTTTTCTTTGGCCAGTAAAATGTCCCCTAGCGTTATCTTTGTGGACGAGgtaatttttctggttaattccttgcgaatttgcttgtaatcagagcactgacagtcttacaatgttattactgttttgtag

Basic information

species Arabidopsis thaliana
transcript AT4G24860.1
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G24860.1 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: LOC_Os07g47530.2 (Oryza sativa), 5'ss of exon 23
TGGTTTGGTGAGGGTGAGAAGTATGTCAAAGCTGTCTTTTCTTTGGCCAGTAAAATGTCCCCTAGCGTTATCTTTGTGGACGAGgt----------aatttttctggttaattccttgcgaatttgcttgtaatcagagcactgacagtcttac-aatgtt---att---actgttttgtag--
|||||||| ||||||||||| |||||||||||||| |||||  | || || |||||  | ||||| || || |||||||| |||||          |||| || |||| | ||  ||  ||||    |     |  |  |||      | |||| ||||||    ||   ||     | ||   
TGGTTTGGCGAGGGTGAGAAATATGTCAAAGCTGTGTTTTCACTTGCAAGCAAAATTGCTCCTAGTGTCATTTTTGTGGATGAGgtcagtcaacaaaattcttatggtcattttttttggaatgaattgtcgtttggcccaccttttatattaccaatgtttcagtttggaccaccatatacct

upper sequence: AT4G24860.1 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: GLYMA04G37050.1 (Glycine max), 5'ss of exon 6
TGGTTTGGTGAGGGTGAGAAGTATGTCAAAGCTGTCTTTTCTTTGGCCAGTAAAATGTCCCCTAGCGTTATCTTTGTGGACGAGgtaatttttctggttaattccttgcgaatttgcttgtaatca----gagcactgacagtc--ttacaatgt-tattactgttt-tgtag
||||||||||||||||| ||||||||||||||||| |||||  |||| ||||||||  | |||||||| || ||||| ||||| ||||   || ||   || |  ||   ||||||  |  | |||      |||     | ||  ||| ||  | |||  ||  || | |||
TGGTTTGGTGAGGGTGAAAAGTATGTCAAAGCTGTTTTTTCCCTGGCTAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAgtaagccttttgcacaaatgttttt-aatttgtatcaattcatctgctgcaaaataaatcagttaaaacttgtatggcttcttgtatag

upper sequence: AT4G24860.1 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: GLYMA17G13850.1 (Glycine max), 5'ss of exon 21
TGGTTTGGTGAGGGTGAGAAGTATGTCAAAGCTGTCTTTTCTTTGGCCAGTAAAATGTCCCCTAGCGTTATCTTTGTGGACGAGgtaatttttctggttaattccttgcgaatttgcttgtaatcagagcactgacagtcttacaatgttattactgttttgtag
|||||||||||||||||||| ||||| |||||||| || ||| |||| |||||||| || ||||| ||||| ||||| || |||||||   || |    ||      | | |||   ||||| |     || |||   | | ||  |  ||    |||||     
TGGTTTGGTGAGGGTGAGAAATATGTGAAAGCTGTTTTCTCTCTGGCGAGTAAAATTTCACCTAGTGTTATATTTGTTGATGAGgtaagccttttaaccaa------gggtattgtgttgta-ttgattcattga--atataactttactagctttgtttcag--

upper sequence: AT4G24860.1 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: GLYMA05G03270.1 (Glycine max), 5'ss of exon 19
TGGTTTGGTGAGGGTGAGAAGTATGTCAAAGCTGTCTTTTCTTTGGCCAGTAAAATGTCCCCTAGCGTTATCTTTGTGGACGAGgtaatttttctggttaattccttgcgaatttgcttgtaatcagagcactgacagtcttacaatgttattactgttttgtag
|||||||| ||||||||||| ||||| |||||||| || ||| |||| |||||||| || ||||| ||||| ||||| || |||||||   || |   | |      | | |||   ||||| |     || ||    | | ||  |  ||    |||||     
TGGTTTGGGGAGGGTGAGAAATATGTGAAAGCTGTTTTCTCTCTGGCGAGTAAAATTTCACCTAGTGTTATATTTGTTGATGAGgtaagccttttaacttaa-----gggtattgttttgta-ttgattcattgg--atgtaactttactagctttgtttcag--

upper sequence: AT4G24860.1 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: GLYMA06G17940.1 (Glycine max), 5'ss of exon 23
TGGTTTGGTGAGGGTGAGAAGTATGTCAAAGCTGTCTTTTCTTTGGCCAGTAAAATGTCCCCTAGCGTTATCTTTGTGGACGAGgtaatttttctggttaattccttgcgaatttgcttgtaatcagagcactgacagtcttacaatg----ttattactgttttgtag----
||||||||||||||||| || || || |||||||| |||||  |||| ||||||||  | |||||||| || ||||| ||||| ||||   || ||  ||| |  |    | ||||  |  | |||        | | |    || ||     || ||  | ||  |      
TGGTTTGGTGAGGGTGAAAAATACGTGAAAGCTGTTTTTTCCCTGGCAAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAgtaagccttttgtataaatgttctt-agtttgtatcaattcaacagctgaaaaataaatcagtgaaaactagtatggcttcttgtatag