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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTTTATGATATTTTCCGGTATGATCTACGGTTGTGGAAAGCATATAGCGTGACATTAGAGgtaacaaactcttgtttccataacaatcgatatcgatttcatcacgtgcgggtctcctctttaaaacatgttctttgtttcag

Basic information

species Arabidopsis thaliana
transcript AT3G61480.1
intron # 22
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164035722|gb|EL997134.1|EL997134
EST:     TTTTCCGGTATGATCTACGGTTGTGGAAAGCATATAGCGTGACATTAGAG                         TCTCACTTGGCTTTCGCTCAGTACCATGACTTACTTCAGA
genomic: TTTTCCGGTATGATCTACGGTTGTGGAAAGCATATAGCGTGACATTAGAGgtaacaaact ... tttgtttcagTCTCACTTGGCTTTCGCTCAGTACCATGACTTACTTCAGA
EST: gi|164024372|gb|ES147641.1|ES147641
EST:     GATCTACGGTTGTGGAAAGCATATAGCGTGACATTAGAG                         TCTCACTTGGCTTTCGCTCAGTACCA
genomic: GATCTACGGTTGTGGAAAGCATATAGCGTGACATTAGAGgtaacaaact ... tttgtttcagTCTCACTTGGCTTTCGCTCAGTACCA
EST: gi|19741419|gb|AU226772.1|AU226772
EST:     TTTTCCGGTATGATCTACGTTTGTG-AAAGCATATAGCGTGACATTAGAG                         TCTCACTTGGCTTTCGCTCAGTACCATGACTTACTTCAGATTTTAGAGGCC
genomic: TTTTCCGGTATGATCTACGGTTGTGGAAAGCATATAGCGTGACATTAGAGgtaacaaact ... tttgtttcagTCTCACTTGGCTTTCGCTCAGTACCATGACTTACTTCAGATTTTAGAGGCA