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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTTAGTGAGGGTGAGAAATATGTCAAAGCTGTCTTTTCGTTGGCTAGTAAAATTTCCCCAAGCATTATCTTTTTGGACGAGgtaattcctcatggtcaattcgtgggcgaatcttgcttgtagtcagagcattgactgtcttacaatattttactgtcttgtag

Basic information

species Arabidopsis thaliana
transcript AT1G62130.1
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G62130.1 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: LOC_Os07g47530.2 (Oryza sativa), 5'ss of exon 23
TGGTTTAGTGAGGGTGAGAAATATGTCAAAGCTGTCTTTTCGTTGGCTAGTAAAATTTCCCCAAGCATTATCTTTTTGGACGAGgt---------aattcctcatggtcaattcgt---gggcgaatc-ttgcttg---tagtcagagcattgactgtcttacaatattttactgtcttgtag--
|||||| | |||||||||||||||||||||||||| |||||  | || || |||||| | || ||  | || ||| |||| |||||         || | || ||||||| ||  |   |   ||||  | | |||    |        |||  |  | || || | ||  ||   | | ||   
TGGTTTGGCGAGGGTGAGAAATATGTCAAAGCTGTGTTTTCACTTGCAAGCAAAATTGCTCCTAGTGTCATTTTTGTGGATGAGgtcagtcaacaaaattcttatggtcattttttttggaatgaattgtcgtttggcccaccttttatattaccaatgtttcagt-ttggaccaccatatacct

upper sequence: AT1G62130.1 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: GLYMA04G37050.1 (Glycine max), 5'ss of exon 6
TGGTTTAGTGAGGGTGAGAAATATGTCAAAGCTGTCTTTTCGTTGGCTAGTAAAATTTCCCCAAGCATTATCTTTTTGGACGAGgtaa---ttcctcatggtcaattcgtgggcgaatcttgcttgtagtcagagcattgactgtcttacaatattttactgtcttgtag--
|||||| |||||||||| || |||||||||||||| |||||  |||||||||||||| | || ||| | || ||| | ||||| ||||   ||   ||       ||       | |||         |    |  ||  |     | | | |  | |    |||||||   
TGGTTTGGTGAGGGTGAAAAGTATGTCAAAGCTGTTTTTTCCCTGGCTAGTAAAATTGCTCCTAGCGTGATATTTGTTGACGAAgtaagccttttgcacaaatgtttttaatttgtatcaattcatctgctgcaaaataaatcagttaaaacttgtatggcttcttgtatag

upper sequence: AT1G62130.1 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: GLYMA17G13850.1 (Glycine max), 5'ss of exon 21
TGGTTTAGTGAGGGTGAGAAATATGTCAAAGCTGTCTTTTCGTTGGCTAGTAAAATTTCCCCAAGCATTATCTTTTTGGACGAGgtaattcctcatggtcaattcgtgggcgaatcttgcttgtagtcagagcattgactgtcttacaatattttactgtcttgtag
|||||| ||||||||||||||||||| |||||||| || ||  |||| ||||||||||| || ||  |||| ||| | || |||||||  | |  |   |||   |     |  |  |  |  |     ||  ||    |  ||  |  | ||| |           
TGGTTTGGTGAGGGTGAGAAATATGTGAAAGCTGTTTTCTCTCTGGCGAGTAAAATTTCACCTAGTGTTATATTTGTTGATGAGgtaagccttt-taaccaag--ggtattgtgttgtattgattcattgaatataactttactagctttgtttcag----------

upper sequence: AT1G62130.1 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: GLYMA05G03270.1 (Glycine max), 5'ss of exon 19
TGGTTTAGTGAGGGTGAGAAATATGTCAAAGCTGTCTTTTCGTTGGCTAGTAAAATTTCCCCAAGCATTATCTTTTTGGACGAGgtaattcctcatggtcaattcgtgggcgaatcttgcttgtagtcagagcattgactgtcttacaatattttactgtcttgtag
|||||| | ||||||||||||||||| |||||||| || ||  |||| ||||||||||| || ||  |||| ||| | || |||||||  | |     | || |   |||      ||| ||    |     |||||  |||   ||  || |   || | ||  ||
TGGTTTGGGGAGGGTGAGAAATATGTGAAAGCTGTTTTCTCTCTGGCGAGTAAAATTTCACCTAGTGTTATATTTGTTGATGAGgtaagcctt-----ttaacttaagggta----ttgttttgtattgattcattggatgta--actttacta-gctttgtttcag