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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACACTGAGAACCTTACTGAAGATCAGTTGGATGCCATGGCAGGAAGTGAGACTTTACGTTATCATGCAACATCATTTGGCATGATGCGAAACAACAAGgtttgtctttttgatcttcaaaaattcaaaataacttactgaatcttgaaagagccaagcattggtgcttaccacaagtgcttttataagcttttgcatc...

Basic information

species Arabidopsis thaliana
transcript AT1G24706.2
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G24706.1 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: GLYMA08G05320.1 (Glycine max), 5'ss of exon 18
ATACACTGAGAACCTTACTGAAGATCAGTTGGATGCCATGGCAGGAAGTGAGACTTTACGTTATCATGCAACATCATTTGGCATGATGCGAAACAACAAGgtttgtctttttgatcttcaaaaattcaaaataactt-actgaatcttgaaagagccaagcattggtgcttaccacaagtgcttttataagcttttgcatc--
 ||||| |||||| | ||||| || ||||||||||| |||||||| ||||||||| |  | ||||| |||||||| |||||  | |  || || || |||||          |    | |  | | ||   |   || | ||||  |  |     ||| |  |  | |   |          | |   ||     ||  |   
GTACACGGAGAACTTGACTGAGGAACAGTTGGATGCAATGGCAGGGAGTGAGACTCTCAGATATCAAGCAACATCTTTTGGTGTAACTCGGAATAATAAGgtacagaggaaagcaagttattattgcagtttggattgattgaaattctact---ccaggtgtaagagacaatttttttcagtgtggcaattcactgtgttaa

upper sequence: AT1G24706.1 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: Vv01s0011g06090.t01 (Vitis vinifera), 5'ss of exon 2
ATACACTGAGAACCTTACTGAAGATCAGTTGGATGCCATGGCAGGAAGTGAGACTTTACGTTATCATGCAACATCATTTGGCATGATGCGAAACAACAAGgtttgtctttttgatcttcaaaaattcaaaataacttactgaatcttgaaagagccaagcattggtgcttaccacaagtgcttttataagcttttgcatc------
 ||||| |||||||| ||||| || ||||||||||| |||||||| ||||||||  | || ||||| || || || ||||| || |   |||||||||||||      ||   | |||  |  ||| |   |  || |    || || || |||   |  ||| ||   ||| |    |  |   |||| ||      |       
GTACACGGAGAACCTGACTGAGGAACAGTTGGATGCTATGGCAGGGAGTGAGACCCTCCGGTATCAGGCTACTTCTTTTGGGATAACCAGAAACAACAAGgt----gcttgcaaacttagattattaattgttgctgaacagattttcaaggagattaa-attagtttatac-attcttattgaaataacctgcaatttactattt