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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACCAGTGTTCCTGTTCTTGTTAGTGTAATTGATAAAGATCTTAGTGAAGCATCAGTGATGCAACACCCTCAAATTTTGTTCTACTGCCAAGCGGGAAGgtatgcttgattaatagtgtctaaatctggtttcactatatctgaagtcaactgttcatacgtttatgcatatttgttaatttcatttttctcacgattcag

Basic information

species Arabidopsis thaliana
transcript AT5G44240.2
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G44240.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: GLYMA12G33340.1 (Glycine max), 5'ss of exon 22
ACACCAGTGTTCCTGTTCTTGTTAGTGTAATTGATAAAGATCTTAGTGAAGCATCAGTGATGCAACACCCTCAAATTTTGTTCTACTGCCAAGCGGGAAGgtatgcttgattaatagtgtctaaatctggtttcactatatctgaagtca-actgttcatacgtttatgcatatttgttaatttcatttttctca-cgattcag----
| || |||||||||||||| ||||||||  |||| |||||||||||||| | | | |||||||| || ||||||||||| || ||||||||||| ||||||| ||      ||||  ||     || | |  |  || | |   | | || |  ||      |||| |   || |||  | ||   |     | | | |||       
ATACTAGTGTTCCTGTTCTAGTTAGTGTGCTTGACAAAGATCTTAGTGAGGAAACTGTGATGCAGCATCCTCAAATTTTATTTTACTGCCAAGCAGGAAGgtttg------taattatgctgctat-tagccttgctgt-ttaaatgccataaagtcttcttgtttttttgtaattggcagttcagtgcaagtgaacaattttttttg

upper sequence: AT5G44240.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: GLYMA13G37090.1 (Glycine max), 5'ss of exon 22
ACACCAGTGTTCCTGTTCTTGTTAGTGTAATTGATAAAGATCTTAGTGAAGCATCAGTGATGCAACACCCTCAAATTTTGTTCTACTGCCAAGCGGGAAGgtatgcttgatta-atagtgtctaaatctggtttcactatatc-tgaagtcaactgttcatacgtttatgcatatttgttaatttcatttttctcacgattcag
| || |||||||||||||| || |||||  |||| ||||||||||||||   | | |||||||| || ||||||||||| || || |||||||| ||||||| ||  | ||||    |    ||    || | |    ||  | | |||||| ||  | | |  | |  | | |                              
ATACTAGTGTTCCTGTTCTAGTCAGTGTGCTTGACAAAGATCTTAGTGAGAAAACTGTGATGCAGCATCCTCAAATTTTATTTTATTGCCAAGCAGGAAGgtttg--taattatgctgctattagccttgctgtttaaatgccataaagtcatctaattacaaatattggaacag-----------------------------