Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTTCAAGATCAGTGAAGAAGTAGTGGTTGATGCTACAGATAAAGGGAATATAGCTCGGCTCATCAATCATTCGgtaagctgcttggcatggactttttacgtacaagaaatttgacagactgttaaagcctaaatcaaaatacgtggtgtgtag

Basic information

species Arabidopsis thaliana
transcript AT4G27910.1
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G27910.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: LOC_Os01g46700.1 (Oryza sativa), 5'ss of exon 21
CTTTTCAAGATCAGTGAAGAAGTAGTGGTTGATGCTACAGATAAAGGGAATATAGCTCGGCTCATCAATCATTCGgtaagctgcttggcatggactttttacgtacaagaaatttgacagactgttaaagcctaaatca-aaatacgtggtgtgtag---
|||||||| ||||| || |||||||| |||||||| ||||||||||| ||  | || ||  | || |||||||| |||||    |    ||   |   | |         | |||   | |  || || ||  | || |    | |||| | | | |   
CTTTTCAAAATCAGCGAGGAAGTAGTCGTTGATGCCACAGATAAAGGAAACGTGGCACGCTTGATTAATCATTCTgtaagg-attatatatacccccctaatcccactctagtttctgaaatagtaaacgcgcatatgatgttttcgtgttttattgcag

upper sequence: AT4G27910.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: GLYMA04G41500.1 (Glycine max), 5'ss of exon 22
CTTTTCAAGATCAGTGAAGAAGTAGTGGTTGATGCTACAGATAAAGGGAATATAGCTCGGCTCATCAATCATTCGgtaagctg-------cttggcatgg-actttttacgtacaagaaatttgacagactgttaaagcctaa--atcaaaatacgtggtgtgtag---------------
|| || ||||| ||||||||||| ||||| ||||| || ||||||||||||||||||||||| || |||||||| |||||          ||||   ||| | ||| |    |  |      |  | || | | ||  |   |   |||   ||| || | | | |               
CTGTTTAAGATTAGTGAAGAAGTGGTGGTAGATGCCACTGATAAAGGGAATATAGCTCGGCTGATTAATCATTCTgtaagtcaacctaaacttgaattggcattttctgtacatcactgtcatctcggattctcaacacaggatagtcatcttacctgttctctggttcatgttaatacag

upper sequence: AT4G27910.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: GLYMA06G13330.1 (Glycine max), 5'ss of exon 22
CTTTTCAAGATCAGTGAAGAAGTAGTGGTTGATGCTACAGATAAAGGGAATATAGCTCGGCTCATCAATCATTCGgtaagctg-------cttggcatgg-actttttacgtacaagaaatttgacagactgttaaagcctaa-----atcaaaatacgtggtgtgtag---------------
|| || ||||| ||||||||||| ||||| ||||| || ||||||||||||||||||||||| || |||||||| || ||          ||||   ||  | ||| |   ||         |  | || | | ||  |   |      | |   ||| || | | | |               
CTGTTTAAGATAAGTGAAGAAGTGGTGGTAGATGCCACTGATAAAGGGAATATAGCTCGGCTGATTAATCATTCTgtgagtcaacctaaacttgaattgacattttctgtatatctttgtcctctcggattctcaactctggataatagttatcttacctgttctttggttcatgttaatacag

upper sequence: AT4G27910.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: GLYMA19G17460.1 (Glycine max), 5'ss of exon 13
CTTTTCAAGATCAGTGAAGAAGTAGTGGTTGATGCTACAGATAAAGGGAATATAGCTCGGCTCATCAATCATTCGgtaagctgcttggcatggactttttacgtacaag--aaatttgacagactgtta--aagcctaaatcaaaatacgtggtgtgtag----------------------------------------
||||||||||| ||||||||||| || || ||||| || |||||||| |||||||| ||||| || || ||||| |||||         || |   | | ||  |      || |||     | | ||   |  |||  |     |    ||||   | |                                        
CTTTTCAAGATAAGTGAAGAAGTGGTAGTAGATGCCACTGATAAAGGAAATATAGCACGGCTAATTAACCATTCTgtaagtgaaccaaaatagttgtatgacaaattgctcaatttttgtgtattattgttacccctgtactctcactaatggttatttgacatctcatcttactattttcttggttcatgtcaatacag

upper sequence: AT4G27910.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: Vv16s0098g00350.t01 (Vitis vinifera), 5'ss of exon 22
CTTTTCAAGATCAGTGAAGAAGTAGTGGTTGATGCTACAGATAAAGGGAATATAGCTCGGCTCATCAATCATTCGgtaagctgcttg-----gcatggact--ttttacgtacaagaaatttgacagactgttaaagcctaaatca---aaatacgtggtgtgtag----------
|| || ||||||||||||||||| || || ||||||||||||||||| || || || || || ||||| || ||||||||    |       ||||    |  |||| |||  | |    |   |   ||   | ||    ||  |    || |  |  || | ||          
CTCTTTAAGATCAGTGAAGAAGTGGTAGTCGATGCTACAGATAAAGGAAACATTGCCCGCCTAATCAACCACTCGgtaagtcattcttatccgcatcagatagtttttcgtttaggtttgtgcccctcctccaatagttccaactacctgaacatttcctg-gcagcttgacagtt