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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCTAACCGACGGAATAACAACTGGCTGCCACCTCCATGGGCAATCCTTGCCCTGGTTGTTCTTGGATTTAATGAATTTATGACTCTCTTAAGgtaccctccttgtccattcttttgaattgactcggcggctttttcatacaatcaagattccgtactcactttggctcttcgtgcctgcatctctcatggcag

Basic information

species Arabidopsis thaliana
transcript AT3G13870.1
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G13870.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: LOC_Os01g39310.1 (Oryza sativa), 5'ss of exon 21
GAAGCTAACCGACGGAATAACAACTGGCTGCCACCTCCATGGGCAATCCTTGCCCTGGTTGTTCTTGGATTTAATGAATTTATGACTCTCTTAAGgtaccctccttgtccattcttttgaattgactcggcggctttttcatacaatcaagattccgtactcactttggctcttcgtgcctgcatctctcatggcag
|| || ||     |||| ||||||||||||||||||||||||||| |    ||  ||| | | |||||||| || || || |||||  | |||| |||    | |    |  |||  |||||       | |  |||   |  | |||    |     ||     |  | |||   |    |||             
GAGGCAAATAAGAGGAACAACAACTGGCTGCCACCTCCATGGGCACTTGCCGCAATGGCTATCCTTGGATTCAACGAGTTCATGACATTGTTAAAgtatttcctt----ctgtctactgaatcatgcatgagcatttgataagctatcgcagtgtttgaccgtactgagttctctttaatggcag------------

upper sequence: AT3G13870.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: GLYMA13G42650.1 (Glycine max), 5'ss of exon 22
GAAGCTAACCGACGGAATAACAACTGGCTGCCACCTCCATGGGCAATCCTTGCCCTGGTTGTTCTTGGATTTAATGAATTTATGACTCTCTTAAGgtaccctccttgtccattcttttgaattgactcggcggctttttcat----acaatcaagattccgtactcactttggctcttcg-tgcctgcatctctcatggcag
||||| |||   || |  |   ||||| | || || |||||||| ||  | ||  || || ||||||||||||||||||||||||| || ||||||| |   ||   |  |  | |||||  |   ||      |||||| |    |  | ||||  ||  || | |  ||  |||||   |  || | | |||  |     
GAAGCCAACAATCGTAGCAGGCACTGGTTACCTCCACCATGGGCGATTGTGGCTTTGCTTATTCTTGGATTTAATGAATTTATGACACTTTTAAGgtgcaagccaactttacccatttgatatctttctaaccttttttcctttggaagaacaaggctc--tatttatattctctcttaactttctacctatcttct-----

upper sequence: AT3G13870.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: GLYMA15G02780.1 (Glycine max), 5'ss of exon 21
GAAGCTAACCGACGGAATAACAACTGGCTGCCACCTCCATGGGCAATCCTTGCCCTGGTTGTTCTTGGATTTAATGAATTTATGACTCTCTTAAGgtaccctccttgtccattcttttga-attgactcggcggctt--tttcatacaatcaagattccgtactcactttggctcttcgtgcctgcatctctcatggcag
||||| |||   || |  | ||||||| | || ||||||||||| ||  | ||  || || ||||||||||||||||||||||||| || |||||||     ||   |  |  | ||||| ||        |   ||  ||| | | || ||||  ||  || | |  || ||||||     || ||| | || |  |  
GAAGCCAACAATCGTAGCAGCAACTGGTTACCTCCTCCATGGGCGATTGTGGCTTTGATTATTCTTGGATTTAATGAATTTATGACACTTTTAAGgtggaagccaactttacccatttgatatctttctaaccttttcctttgaaagaaacaaggctc--tatttatattcgctcttaac-tctccatatatcttctc--

upper sequence: AT3G13870.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: GLYMA08G20610.1 (Glycine max), 5'ss of exon 21
GAAGCTAACCGACGGAATAACAACTGGCTGCCACCTCCATGGGCAATCCTTGCCCTGGTTGTTCTTGGATTTAATGAATTTATGACTCTCTTAAGgtaccctccttgtccattcttttgaattgactcggcggctttttcatacaatcaagattccgtactcactttggctcttcgtgcctgcatctctcatggcag---
|| || |||   || || ||||||||| | || || |||||||||||  ||||  ||||| |||| |||||||||||||||||||| ||  |||||| |         | | || | ||   |   |        ||||| | |  |   | ||   |  |    ||  ||     | | |||  |||| |  || |   
GAGGCCAACAAGCGCAACAACAACTGGTTACCTCCCCCATGGGCAATAGTTGCTTTGGTTATTCTGGGATTTAATGAATTTATGACACTTCTAAGgtgcatgttaaccctactcatctgctgtatatttttctagttttccttctct---ggttttatctttctcttaacttgc--ttcttgctcctctaacagcggctc

upper sequence: AT3G13870.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: Vv09s0002g02200.t01 (Vitis vinifera), 5'ss of exon 21
GAAGCTAACCGACGGAATAACAACTGGCTGCCACCTCCATGGGCAATCCTTGCCCTGGTTGTTCTTGGATTTAATGAATTTATGACTCTCTTAAGgtaccctccttgtccatt-cttttgaattgactcggcggctttttcatacaatcaagattcc-----gtactcactttggctcttcgtgcct--gcatctct-catggcag
||||| |||   || |||||||||||| | |||||||||||||||||  ||||  |||| || || ||||| |||||||||||||| ||  ||||||||  |  |||    |  || | |||| || | |  ||  | | ||  |   |||||||||     ||   |   | || | |   |  ||  |||| ||| ||||||||
GAAGCCAACAAGCGTAATAACAACTGGTTACCACCTCCATGGGCAATTGTTGCTATGGTCGTCCTGGGATTCAATGAATTTATGACACTTCTAAGgtact-tgtttgcatgtaactgtggaatcgatttgttgg--tgtacaagcttccaagattcccctttgtttgccgctgggttttaattatcttagcatttcttcatggcag