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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGCTTGGGACTTCCTGATACAGAAGCTTGGAACATGATCGAGACAATAGCAGAGAAACAAAAGCTTGGATATAAATTACTGgtaaattaggctttctgttcatatcgttctgcagttattgaaatgtcacagattttgttaactttatactccatacatttacaaacttcaagctttttaattgggcttttggaaaccataaccaactgagtccatatcttttttgttgtatcttgaattttgtttcag

Basic information

species Arabidopsis thaliana
transcript AT1G49040.2
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G49040.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: GLYMA08G04510.1 (Glycine max), 5'ss of exon 21
GCTGGCTTGGGACTTCCTGATACAGAAGCTTGGAACATGATCGAGACAATAGCAGAGAAACAAAAGCTTGGATATAAATTACTGgtaaattaggctttctgttcatatcgttctgcagttattgaaatgtcacagattttgttaactttatactccatacatttacaaacttcaagctttttaattgggcttttggaaaccataaccaactgagtccatatcttttttgttgtatcttgaattttgtttcag
|||||  |||||||||||||||  || |||||| |||||||||| ||||| |||||||   | |   | ||||  ||   | | |||| |||    | || ||    ||  |||| |   ||   | |     | |||  |  ||  | ||| |       | | |||   | || | |    | ||     |                                                           
GCTGGGCTGGGACTTCCTGATAATGATGCTTGGTACATGATCGAAACAATTGCAGAGAGGAACAGCATCGGATCCAATCAATTTgtaagttaa---tgctattttggtc--tctggaaaaatcctagtcatgaaaattacggaaaact-ataattttggtctctgcaa---taaatcatccagagtgctacat-----------------------------------------------------------

upper sequence: AT1G49040.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: GLYMA05G35210.1 (Glycine max), 5'ss of exon 4
GCTGGCTTGGGACTTCCTGATACAGAAGCTTGGAACATGATCGAGACAATAGCAGAGAAACAAAAGCTTGGATATAAATTACTGgtaaattaggctttctgttcatatcgttctgcagttattgaaatgtcacagattttgttaactttatactccatacatttacaaacttcaagctttttaattgggcttttggaaaccataaccaactgagtccatatcttttttgttgtatcttgaattttgtttcag
|||||  |||||||||||||||  || |||||| |||||||||| ||||| |||||||   | |   | ||||  ||   | | |||| |||    | || ||  | ||  |||| |   ||   | |     | ||| ||   ||  |||| |       | | |||   | || | |    | ||     |                                                           
GCTGGGCTGGGACTTCCTGATAATGATGCTTGGTACATGATCGAAACAATTGCAGAGAGGAATAGCATCGGATCCAAGCAATTTgtaagttaa---tgctatttttgtc--tctggaaaaatcctagtcatgaaaattatgg-gacactataattttggtctctgcaa---taaatcatccagagtgctacat-----------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116437573|gb|EG480165.1|EG480165
EST:     ACATGATCGAGACAATAGCAGAGAAACAAAAGCTTGGATATAAATTACTG                         ATTAAACTTAGAGGGTTCCTGTCGCATGTTCAGCAACTTCGTGTCGGCTAT
genomic: ACATGATCGAGACAATAGCAGAGAAACAAAAGCTTGGATATAAATTACTGgtaaattagg ... tttgtttcagATTAAACTTAGAGGGTTCCTGTCGCATGTTCAGCAACTTCGTGTCGGCTAT