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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCAGAGAGTCTCAATGGCTAGGGCAGTCTACTCAAATTCAGATGTTTACATATTCGATGATCCTTTGAGTGCATTAGATGCTCATGTTGCTCACCAGgtattctaatggttgatttattacataaatgataacctcttaatgctgatattaatgtttgttcagccatttcatctatgaggaatccgcatgatcatccactgtattagaattttagttctcagtaatttttttaggtacatctgacgacagacttctctgaatcacaagtaacag

Basic information

species Arabidopsis thaliana
transcript AT1G30410.1
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G30410.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: LOC_Os04g52900.2 (Oryza sativa), 5'ss of exon 19
GAAGCAGAGAGTCTCAATGGCTAGGGCAGTCTACTCAAATTCAGATGTTTACATATTCGATGATCCTTTGAGTGCATTAGATGCTCATGTTGCTCACCAGgtattctaatggttgatttattacataaatgataacctcttaatgctgatattaatgtttgttcagccatttcatctatgaggaatccgcatgatcatccactgtattagaattttagttctcagtaatttttttaggtacatctgacgacagacttctctgaatcacaagtaacag
 || ||||||||||||||||| || || || || ||  |||||||||| |||||||| ||||||||  |||||||||||||||| ||||||| ||  |||||    | ||       ||  |||      | |    || |  |    || |||  || |   | ||  | |||  | ||       |   || | ||     || | |   ||                                                               
AAAACAGAGAGTCTCAATGGCAAGAGCTGTTTATTCTGATTCAGATGTCTACATATTTGATGATCCACTGAGTGCATTAGATGCCCATGTTGGTCGACAGgtgcattcat------cttgctaccactgcggt----tcatgctttcaattttacagtctcccccgcattatcaaatctgccagtggcagttggtaatg----gtgtcaatgtt---------------------------------------------------------------

upper sequence: AT1G30410.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: GRMZM2G084181_T01 (Zea mays), 5'ss of exon 19
GAAGCAGAGAGTCTCAATGGCTAGGGCAGTCTACTCAAATTCAGATGTTTACATATTCGATGATCCTTTGAGTGCATTAGATGCTCATGTTGCTCACCAGgtattctaatggttgatttattacataaatgataacctcttaatgctgatattaatgtttgttcagccatttcatctatgaggaatccgcatgatcatccactgtattagaattttagttctcagtaatttttttaggtacatctgacgacagacttctctgaatcacaagtaacag
|||||| ||||| |||||||| || || || || ||  |||||||||| |||||||| ||||||||  | |||||||||||||| |||||||  |  |||||             ||| |  |  |   |  |    |||  ||  | ||    || | |  |||  |||       | || ||| |  | |    |||||   ||||||    |||  |                                                         
GAAGCAAAGAGTTTCAATGGCAAGAGCTGTGTATTCTGATTCAGATGTGTACATATTTGATGATCCACTCAGTGCATTAGATGCCCATGTTGGCCGGCAGgtg-----------aattcaccatcttgcttgtggtttct--atttttatg---atctatactca--catactgaaaaggatgaaccatcgttcagatccatgttattagg---ttacctt--------------------------------------------------------

upper sequence: AT1G30410.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: GLYMA06G46940.1 (Glycine max), 5'ss of exon 21
GAAGCAGAGAGTCTCAATGGCTAGGGCAGTCTACTCAAATTCAGATGTTTACATATTCGATGATCCTTTGAGTGCATTAGATGCTCATGTTGCTCACCAGgtattctaatggttgatttattacataaatgataacctcttaatgctgatattaatgtttgttcagccatttcatctatgaggaatccgcatgatcatccactgtattagaattttagttctcagtaatttttttaggtacatctgacgacagacttctctgaatcacaagtaacag
 ||||| ||||| || || |||||||| || ||||||||||| ||| | || ||||| |||||||||||||||||  | ||||||||| |||||||  ||||||  |      | |||| |||          || ||||  |||   |  |  |||||     |    |  ||||||||  |  |  |    ||         |   | |||                                                                
AAAGCAAAGAGTTTCCATAGCTAGGGCTGTATACTCAAATTCGGATATATATATATTTGATGATCCTTTGAGTGCTCTTGATGCTCATATTGCTCAAGAGgtatcttc----cttatttcttat--------caagctctagatgacaa-gtccatgttatggtataagtaccatctatggaggctagggtacattggttgaaattcaaaaat----------------------------------------------------------------

upper sequence: AT1G30410.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: Vv10s0003g04460.t01 (Vitis vinifera), 5'ss of exon 1
GAAGCAGAGAGTCTCAATGGCTAGGGCAGTCTACTCAAATTCAGATGTTTACATATTCGATGATCCTTTGAGTGCATTAGATGCTCATGTTGCTCACCAGgtattctaatggttgattt-attacataaatgataacctcttaatgctgatattaatgtttgttcagccatttcatctatgaggaatccgcatgatcatccactgtattagaattttagttctcagtaatttttttaggtacatctgacgacagacttctctgaatcacaagtaacag
                |||||||||||||| || || || |||||| | |||||||| ||||||||||| |||||  ||||||| ||||||||||| |||||||||||||  ||  ||| |  |  |  ||    |   | |    ||   |      | || | | ||||    | | |||  | |    | |  |||                                                                               
----------------ATGGCTAGGGCAGTATATTCCAAGTCAGATATATACATATTTGATGATCCTTTAAGTGCTCTAGATGCACATGTTGCTCAACAGgtattctaatatttcttttcaccatttctatttctattgcattccactccaagccgaatatggtta-ccataatgtatgtgat-attttttaagcccatgtt----------------------------------------------------------------------------

upper sequence: AT1G30410.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: Vv10s0003g04470.t01 (Vitis vinifera), 5'ss of exon 20
GAAGCAGAGAGTCTCAATGGCTAGGGCAGTCTACTCAAATTCAGATGTTTACATATTCGATGATCCTTTGAGTGCATTAGATGCTCATGTTGCTCACCAGgtattctaatggttgatt-tattacataaatgataacctcttaatgctgatattaatgtttgttcagccatttcatctatgaggaatccgcatgatcatccactgtattagaattttagttctcagtaatttttttaggtacatctgacgacagacttctctgaatcacaagtaacag
 ||||| ||||| |||||||||||||| || || || ||||||||||| |||||||||||||| ||||| |||||  ||||||||||||| ||||| |||||||| ||        |   | | ||| | |||||      | |   |   |    ||  | ||      ||||   | |   || |||   | | | ||  |||                                                                         
AAAGCAAAGAGTTTCAATGGCTAGGGCTGTATATTCTAATTCAGATGTATACATATTCGATGACCCTTTAAGTGCTCTAGATGCTCATGTCGCTCAACAGgtattatagaatcacctcacactccatgattgatatttctgttacattctcaaagctgaatattt-----tttctggtgttttgagtccatctta-cttcagctga------------------------------------------------------------------------