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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAATCCCCTGTGGTCCGCACAAAAACATACACCACTTACAGTATTGATGAGAATCCTACAGGGACTAATGCAATTGTTGCTGTCCTCGCACATACAGGgtaagaaactgcttttgcgtacaagatcttgtcagtgataagcttttttcgttaatgtttcttctcttgttcttttatccacctacctgtctcacag

Basic information

species Arabidopsis thaliana
transcript AT1G29940.1
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G29940.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: Vv13s0084g00600.t01 (Vitis vinifera), 5'ss of exon 20
CTCAATCCCCTGTGGTCCGCACAAAAACATACACCACTTACAGTATTGATGAGAATCCTACAGGGACTAATGCAATTGTTGCTGTCCTCGCACATACAGGgtaagaaactgcttttgcgtacaagatcttgtcagtgataagcttttttcgttaatgtttcttctcttgttcttttatccacctacctgtctcacag
||||| | ||  | || || ||||   ||||    |  ||||| || || ||   ||| |||||||| ||||||||||||||||| || ||| || |||||||| ||  |         || | ||   ||  ||  |||   ||  ||   ||   | | |    ||| | ||||    |  || |          
CTCAAACTCCCATTGTTCGTACAAGTGCATATGTGAAGTACAGCATGGACGAATTTCCAACAGGGACAAATGCAATTGTTGCTGTTCTAGCATATTCAGGgtaaaaattt---------tagatgaatatga-agacatatatttcattttatagcatctgtatgattggttttttcgtaaattatccag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116447247|gb|EG489839.1|EG489839
EST:     GAGAATCCTACAGGGACTAATGCAATTGTTGCTGTCCTCGCACATACAGG                         ATTTGATATGGAAGACGCGATGATTTTGAACAAATCATCTGTGGAGCGGGG
genomic: GAGAATCCTACAGGGACTAATGCAATTGTTGCTGTCCTCGCACATACAGGgtaagaaact ... tgtctcacagATTTGATATGGAAGACGCGATGATTTTGAACAAATCATCTGTGGAGCGGGG
EST: gi|116447248|gb|EG489840.1|EG489840
EST:     GAGAATCCTACAGGGACTAATGCAATTGTTGCTGTCCTCGCACATACAGG                         ATTTGATATGGAAGACGCGATGATTTTGAACAAATCATCTGTGGAGCGGGG
genomic: GAGAATCCTACAGGGACTAATGCAATTGTTGCTGTCCTCGCACATACAGGgtaagaaact ... tgtctcacagATTTGATATGGAAGACGCGATGATTTTGAACAAATCATCTGTGGAGCGGGG